search for: packagestatus

How can I specify the repositories for upgrade()? > x <- packageStatus(repositories = "http://cran.us.r-project.org//bin/windows/contrib/2.0") > upgrade(x, ask = FALSE) Error in update[, 3] : incorrect number of dimensions x, the object of class "packageStatus", prints and summarizes fine. I also ran install.packages() without incident. > in...

Hello, when I run packageStatus(), I get the following results: > packageStatus() Number of installed packages: ok upgrade unavailable /home/fernando/my_library 38 0 1 /usr/local/lib/R/library 28 0 0 Number of available packages (each package/bundle counte...

Hi all, I use a function update.packages to update all packages in my R instalation. But I need compare one by one packages to discovery new packages. My question is: Exist in R any function that compare all installed packages in my R and all packages available in CRAN and return a list of the new packages (ie packages that I dont have im my installation) and automatic download and install

...summary.default [7] summary.ecdf* summary.factor [9] summary.glm summary.infl [11] summary.lm summary.loess* [13] summary.manova summary.matrix [15] summary.mlm summary.nls* [17] summary.packageStatus* summary.POSIXct [19] summary.POSIXlt summary.ppr* [21] summary.prcomp* summary.princomp* [23] summary.stepfun summary.stl* [25] summary.table summary.tukeysmooth* Non-visible functions are asterisked =============================...

...l R packages from CRAN. That did not run as it was, but after some fiddling I arrived at the following script, which does run and it builds many packages and reports failures on the rest: #R_installAll.R options(repos = "http://lib.stat.cmu.edu/R/CRAN/") update.packages(ask=F) x <- packageStatus(repositories="http://cran.r-project.org/src/contrib") st <- x$avai["Status"] install.packages(rownames(st)[which(st$Status=="not installed")], dependencies=T) If I run that in batch mode (as root, of course) > R CMD BATCH R_installAll.R It produces some inf...

When loading a package with library(APkg) or require(APkg) I would like to make sure that (1) the correct version of [R] is installed. If not an informative error message should be given. I would also like to make sure that (2) another required package which is loaded from within the APkg package (by require(OtherPkg)) is of a certain version or later. First of all, I believe that the check

...or 'gbm', details: call: NULL error: 'packageVersion' is not an exported object from 'namespace:utils' ERROR: loading failed In the utils namespace I have > utils::package [tab-tab] utils::package.contents utils::package.skeleton utils::packageDescription utils::packageStatus but no utils::packageVersion. I can install gbm on my MacBook in OS X no problem. Any idea what could be the issue. Thanks, Doug Colkitt [[alternative HTML version deleted]]

Running under Redhat 7.3 Linux I have installed R Version 1.8.0 (2003-10-08) from a binary download using the rpm manager. Using packageStatus(), I am attempted to upgrade several packages. This is unsuccessful with the following error messages: * Installing *source* package 'MASS' ... ** libs gcc -I/usr/lib/R/include -I/usr/local/include -D__NO_MATH_INLINES -mieee-fp -fPIC -O2 -m486 -fno-strength-reduce -g -c MASS.c -o MASS...

I only recently discovered options("available_packages_filters" = list(add = TRUE, "license/FOSS")) [cf. help("available.packages", package="utils") in R 2.10.0 or later] which goes nicely with my options("checkPackageLicense" = TRUE) [new in R 2.11]. But now I want to purge my library of packages I would not have installed had I known about

...g Warnes 'Makefile' http://tolstoy.newcastle.edu.au/R/help/04/04/0723.html and http://tolstoy.newcastle.edu.au/R/help/04/04/0616.html which is from Tony and has the following small function: installNewCRANPackages <- function() { ## (C) A.J. Rossini, 2002--2004 test2 <- packageStatus()$avail["Status"] install.packages(row.names(test2)[which(test2$Status=="not installed")]) } ---------- Rodney Sparapani Medical College of Wisconsin Sr. Biostatistician Patient Care & Outcomes Research rsparapa at mcw.edu http://w...

...d. However, foo <- installed.packages() as.vector(foo[is.na(foo[, "Priority"]), 1]) will give you a character vector which you can feed to install.packages(), so it's not complex to do manually. 4. If the previous installation is still alive, fire it up and pS <- packageStatus() pkgs <- pS$inst$Package[!pS$inst$Priority %in% c("base", "recommended")] save(pkgs, file = "foo") In the new installation, load("foo") install.packages(pkgs) Helmut Kudrnovsky wrote: > hi R-users, > > a few days ago R 2.2.1 ca...

Hi All, I searched around to find the number of R packages currently available, but didn't find anything, so I choose all repositories & told it to install. The list contained about 2,856 (correcting roughly for those installed). But the list includes repetitions such as 19 names that begin with "bvbovine". Selecting only CRAN and CRAN(extras) I get 1,344. Is there an easier

...9;, 'print.roman', 'print.sessionInfo', 'print.socket', 'print.vignette', 'prompt.data.frame', 'pro mpt.default', 'stack.data.frame', 'stack.default', 'str.POSIXt', 'str.data.frame', 'str.default', 'su mmary.packageStatus', 'tail.data.frame', 'tail.default', 'tail.function', 'tail.matrix', 'tail.ftable ', 'tail.table', 'toBibtex.citation', 'toBibtex.citationList', 'toBibtex.person', 'toBibtex [... trun cated] Execution halted make[4]: **...

...1.1-7 in /usr/local/lib/R-contrib Version 2.0-1 on CRAN WARNING: major version number change Update (y/N)? *) if ask=FALSE, update.packages() will cowardly refuse the updates and issue a warning for all packages that have not been updated. *) the same will be done for the methods working off packageStatus objects. Note that we are already working on new package management tools which should make it easier to have multiple versions of a package installed simultaneously. All comments are welcome. Best, Fritz -.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.- r-devel m...

...to remove it altogether, and either a) delete the downloaded files at the end of install.packages or b) leave them in the per-session directory to be deleted at the end of the session. that is to force answer 'y' or 'n' respectively. Does anyone see any problems with a)? 2) ?packageStatus says Summarize information about installed packages and packages available at various repositories, and automatically upgrade outdated packages. These tools will replace 'update.packages' and friends in the future and are currently work in progress. but `progress'...

Dear List: I am estimating a gls model and am having to make some rather unconventional modifications to handle a particular problem I have identified. My aim is to fit a GLS with an AR1 structure, obtain the variance-covariance matrix (V), modify it as needed given my research problem, and then reestimate the GLS by brute force using matrix operations. All seems to be working almost perfectly,

A minor inconvenience in updating an R installation is remembering which packages were installed previously. Has anyone written a script to inspect a previous installation, then get & install the same packages into the new installation? -- Michael Prager NOAA Center for Coastal Fisheries and Habitat Research Beaufort, North Carolina 28516 Opinions expressed are personal, not official.

Hi, Somebody asked me to make sure that all the machines running the in our lab (XP and Linux, both running 2.0) have R installed and that A) All the packages are installed and B) kept up-to-date. Obediently, I began to modify a shared Rprofile so that once a week it checks for new packages and updates to the current version of the installed packages on CRAN. Sounds simple enough. Plus some

...-session repository cache are used (default true, as before) and if so how old cached values can be to be used (default one hour). These arguments can be passed from install.packages(), update.packages() and functions calling that: to enable this available.packages(), packageStatus() and download.file() gain a ... argument. * packageStatus()'s upgrade() method no longer ignores its ... argument but passes it to install.packages(). * installed.packages() gains a ... argument to allow arguments (including noCache) to be passed from new.packages()...

...-session repository cache are used (default true, as before) and if so how old cached values can be to be used (default one hour). These arguments can be passed from install.packages(), update.packages() and functions calling that: to enable this available.packages(), packageStatus() and download.file() gain a ... argument. * packageStatus()'s upgrade() method no longer ignores its ... argument but passes it to install.packages(). * installed.packages() gains a ... argument to allow arguments (including noCache) to be passed from new.packages()...