search for: ozgul

I have two data matrices that I want to make the correlation between each column from data1 and each column from data 2 and also calculate the p-value Matrices dont have the same size and I tried such a script. > bg <- read.table (file.choose(), header=T, row.names) > bg > Otu00022 Otu00029 Otu00039 Otu00042 Otu00101 Otu00105 Otu00125 Otu00131 Otu00137 Otu00155 Otu00158 Otu00172

hello, how can I do to drop C from this character "C325" ? _____________________________________________________________________________ [[alternative HTML version deleted]]

Hello, I have a very data matrix and I have a file which has the names that I need to subset. However I cannot manage to subset the main file. ANy idea? bg <- read.table (file.choose(), header=T, row.names) bg Otu00022 Otu00029 Otu00039 Otu00042 Otu00101 Otu00105 Otu00125 Otu00131 Otu00137 Otu00155 Otu00158 Otu00172 Otu00181 Otu00185 Otu00190 Otu00209 Otu00218 Gi20Jun11 0.001217

...t() command but I would like to have an output for whole matrix. Besides,I would like to plot the relative abundance of each OTU, against the number of significant pair-wise correlations to other OTUs. However, I do not know how to introduce p <.05 parameter in the script. Thank you very much! Ozgul

I am trying to find the percentage of the parameters explaining the bacterial community composition. I have one data matrix with relative abundance of OTUs and one with environmental parameters. I used varpart in vegan package but the values in the venn diagram is bigger than 100% in total.How is it possible? What might be the reason? Thank you library(vegan) gotud <-

...location) Zx <- Z[c(4:504)] Zxm <- as.matrix(Z) m<- manova(Zxm~Season*location, data=Z) when I do summary.aov, I get respond for each species but summary.manova summary.manova(m) :" residuals have rank" 24<501. What can it be the reason for this error message? Thank you, Ozgul Below you can see part of the table. name Season location Acetobacter Aerococcus Alishewanella Amaricoccus xls-nord-01 J w 0 0,024078979 0 0 bxls-sud-01 J w 0 0 0 0 brux-nord-04 A w 0 0 0 0 brux-sud-04 A w 0 0 0 0 br-nord-07 Ju w 0 0 0 0 br-sud-07 Ju w 0 0 0 0 b-nord-10 O w 0 0 0 0 bsud-10 O w 0...

Dear All, I am plotting a graph in ggplot, I would like to magnify the values between 0-1 without losing data in the higher range. How can I do that? neither scale_y_continous nor coord_cartesian works. Thank you ?zg?l Universit? Libre de Bruxelles

Dear All, When I plot the values and linear regression line for one data set, it is fine. But for another one I see zigzags, when I plot the confidence interval >cd Depth CHAOsep12RNA 9,94 804 25,06 1476,833333 40,04 1540,561404 50,11 1575,166667 52,46 349,222222 54,92 1941,5 57,29 1053,507042 60,11 1535,1 70,04 2244,963303 79,97 1954,507042 100,31 2679,140625 >

...e so it > is more specific > than "Re: Contents of R-help digest..." > > > Today's Topics: > > 1. Re: use mathematics formula (hadley wickham) > 2. creating different strata (raymond chiruka) > 3. converting a data frame to ts objects (fatih > ozgul) > 4. Running R function as a Batch process (d. > sarthi maheshwari) > 5. Re: creating different strata (raymond > chiruka) > 6. Re: Filled step-function? (Beate Kowalczyk) > 7. Re: creating different strata (Petr > Klasterecky) > 8. Re: use mathematics formul...

Hello, I have a data matrix consists of species as columns and sites as rows. N Chlamydiae Deferribacteres GN12 Hyd24-12 KSB1 PAUC34f SC4 SPAM Thermi WPS-2 ZB3 AD3 Elusimicrobia GAL15 ABY1_OD1 OP9 Fusobacteria HDBW-WB69 OP11 WS1 SR1 ZB2 AC1 OP3 OP8 NC10 NKB19 TM7 WS3 Gemmatimonadetes Lentisphaerae GN02 Armatimonadetes Tenericutes Spirochaetes Epsilonproteobacteria TM6 Acidobacteria Chlorobi