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http://biomet.oxfordjournals.org/cgi/reprint/86/3/677 biometrika1999 http://biomet.oxfordjournals.org/cgi/reprint/94/4/1006 biometrika2000 Hi All: I just want to try some luck. I am currenly working on my project,one part of my project is to reanalysis the kenward cattle data by using the method in Mohsen's paper,b...

Hi all, I want to make a histogram like the one show http://nar.oxfordjournals.org/content/39/suppl_1/D1011/F1.expansion.html here , but I did not figure out how to add the red marks at the bottom of the bars. Could anybody help? Thank you very much -- View this message in context: http://r.789695.n4.nabble.com/annotate-histogram-tp3963960p3963960.html Sent from the R help m...

...or sparse data. I am happy to give more details if needed. David Fletcher Department of Mathematics and Statistics University of Otago Dunedin New Zealand D.J. Fletcher (2012) Estimating overdispersion when fitting a generalized linear model to sparse data. Biometrika 99:230?237 (http://biomet.oxfordjournals.org/content/99/1/230.abstract?etoc)

Hi, Please could somebody has any information about the following package: IlluminaGUI, published here: http://bioinformatics.oxfordjournals.org/cgi/content/abstract/btm101v1 The link given in the article is dead and authors doesn't reply ! Is there someone who uses it ? Thank you very much for help -- View this message in context: http://www.nabble.com/Don%27t-find-a-package-%21-tp22034934p22034934.html Sent from the R help ma...

...ries for each individual from an individual growth model (fit with a linear mixed effects model in lme). How can I plot each person's trajectory in the *same* panel, along with the mean-level trajectory? Below is an image of a plot similar to what I'm trying to create (from: http://jpepsy.oxfordjournals.org/content/31/10/1002/F6.large.jpg): http://r.789695.n4.nabble.com/file/n3315494/fitted_trajectories.jpg Thanks so much for your help! -- View this message in context: http://r.789695.n4.nabble.com/Plotting-individual-trajectories-from-individual-growth-model-tp3315494p3315494.html Sent from th...

Dear all, Can I do a permutation test if the number of individuals in one group is much bigger than in the other group? I searched the literature but I didin´t find any assumption that refers to this subject for permutation tests. Best regards João Fadista Ph.d. student UNIVERSITY OF AARHUS Faculty of Agricultural Sciences Dept. of Genetics and Biotechnology Blichers Allé 20, P.O.

Hello useRs (please don't kill me), I've fairly new to R having only a few months of playing around with R. What little I've learned has been extremely useful. If someone could point me as to how to replicate the Boltzman Sigmodial curve fit as provided by Graphpad software I'd be eternally grateful. Where we currently use Graphpad for only this one function,its seems highly

...reference below gives details regarding its asymptotic properties, as well as simulation results that illustrate the benefits of using it for sparse data. D.J. Fletcher (2012) Estimating overdispersion when fitting a generalized linear model to sparse data. Biometrika 99:230?237 (http://biomet.oxfordjournals.org/content/99/1/230.abstract?etoc)

...s, an update of the ROCR package is available on CRAN. ROCR helps in evaluating the performance of scoring classifiers using ROC graphs, precision/recall plots, lift charts and many other performance metrics. For further information check http://rocr.bioinf.mpi-sb.mpg.de and http://bioinformatics.oxfordjournals.org/cgi/reprint/21/20/3940 NEWS: - added an optional parameter 'fpr.stop' to the performance measure 'auc', allowing to calculate the partial area under the ROC curve up to the false positive rate given by 'fpr.stop'. - fixed bug in 'prediction' function which...

...Fisher's exact test and Blaker's exact test as well as giving an exact version of McNemar's test. For a description see: Fay (2010) R Journal 2(1):53-58. http://journal.r-project.org/archive/2010-1/RJournal_2010-1.html and Fay (2010) Biostatistics 11(2): 373-374. http://biostatistics.oxfordjournals.org/content/11/2/373 Mike ****************************************************************** Michael P. Fay, PhD Mathematical Statistician National Institute of Allergy and Infectious Diseases Tel: 301-451-5124 Fax:301-480-0912 (U.S. postal mail address) 6700B Rockledge Drive MSC 7...

...s, an update of the ROCR package is available on CRAN. ROCR helps in evaluating the performance of scoring classifiers using ROC graphs, precision/recall plots, lift charts and many other performance metrics. For further information check http://rocr.bioinf.mpi-sb.mpg.de and http://bioinformatics.oxfordjournals.org/cgi/reprint/21/20/3940 NEWS: - added an optional parameter 'fpr.stop' to the performance measure 'auc', allowing to calculate the partial area under the ROC curve up to the false positive rate given by 'fpr.stop'. - fixed bug in 'prediction' function which...

If you mean this paper by Fahrmeir: http://biomet.oxfordjournals.org/cgi/content/abstract/81/2/317 I would recommend BayesX: http://www.stat.uni-muenchen.de/~bayesx/. BayesX interfaces with R and estimates discrete (and continuous) time survival data with penalized regression methods. If you are looking for a bona fide Bayesian survival analysis method and do n...

...Fisher's exact test and Blaker's exact test as well as giving an exact version of McNemar's test. For a description see: Fay (2010) R Journal 2(1):53-58. http://journal.r-project.org/archive/2010-1/RJournal_2010-1.html and Fay (2010) Biostatistics 11(2): 373-374. http://biostatistics.oxfordjournals.org/content/11/2/373 Mike ****************************************************************** Michael P. Fay, PhD Mathematical Statistician National Institute of Allergy and Infectious Diseases Tel: 301-451-5124 Fax:301-480-0912 (U.S. postal mail address) 6700B Rockledge Drive MSC 7...

Does anyone know how to plot mismatch distributions in R, in order to look similar to : http://mbe.oxfordjournals.org/content/20/1/76/F7.large.jpg -- View this message in context: http://r.789695.n4.nabble.com/Plot-mismatch-distributions-in-R-tp3554850p3554850.html Sent from the R help mailing list archive at Nabble.com.

Hello, I'm trying to cluster gene expression data as in http://bioinformatics.oxfordjournals.org/content/28/2/222.full It looks like they are using some combination of FlexMix and mgcv but I haven't been able to figure out the exact steps necessary to perform the clustering. Has anyone else used FlexMix to do clustering on this type of data before? Any pointers would be much apprecia...

This is the named article: http://ije.oxfordjournals.org/content/37/5/1161.long maybe it can help you to help me... :-( -- View this message in context: http://r.789695.n4.nabble.com/INSTRUMENTAL-VARIABLES-WITH-BINARY-OUTCOMES-tp4642361p4642363.html Sent from the R help mailing list archive at Nabble.com.

Hello, I recently began using R and the lme4 package to carry out linear mixed effects analyses. I am interested in the effects of variables 'prime','time', and 'mood' on 'reaction_time' while taking into account the random effect 'subjects.' I've read through documentation on lme4 and came up with the following formula for use with lmer:

Dear time-series specialist: I've got some time series representing measurements from a physical process, like atomic decay data. These time series look almost random, but should hopefully be distinguishable as they were taken under different conditions. I am looking for statistical approaches that are sensitive enough to discriminate between such series of measurements. Preferably, there

Note that cophenetic.default (which works on the output of hclust(dist(X))) uses the row names of X as labels. as.dendrogram.hclust does not retain those row names so cophenetic.dendrogram cannot use them (so it orders them based on the topology of the dendrogram). Bill Dunlap TIBCO Software wdunlap tibco.com On Thu, Apr 21, 2016 at 7:59 AM, William Dunlap <wdunlap at tibco.com> wrote:

On Feb 7, 2012, at 12:10 PM, Hal Finkel wrote: >>> 1. "Target Data" for vectorization - I think that in order to improve >>> the vectorization quality, the vectorizer will need more information >>> about the target. This information could be provided in the form of a >>> kind of extended target data. This extended target data might contain: