search for: orterun

...nd objects. PKG_CPPFLAGS = @PKG_CPPFLAGS@ PKG_LIBS = -L/home/g/Desktop/Project -fpmpip ### For user configuration. USER_CONF = Makeconf ### Start making here. all: $(SHLIB)@echo "MPIRUN = @MPIRUN@" > $(USER_CONF)@echo "MPIEXEC = @MPIEXEC@" >> $(USER_CONF)@echo "ORTERUN = @ORTERUN@" >> $(USER_CONF)@echo "TMP_INC = @TMP_INC@" >> $(USER_CONF)@echo "TMP_LIB = @TMP_LIB@" >> $(USER_CONF)@echo "MPI_ROOT = @MPI_ROOT@" >> $(USER_CONF)@echo "MPITYPE = @MPITYPE@" >> $(USER_CONF)@echo "MPI_INCLUD...

Hello, We have R working with Rmpi/openmpi, but I'm a little worried. Specifically, (a) the -np flag doesn't seem to override the hostfile (it works fine with fortran hello world) and (b) I appear to have twice as many processes running as I think I should. Rmpi version 0.5.5 Openmpi version 1.1 Viglen HPC with (effectively) 9 blades and 8 nodes on each blade. myhosts file contains

...ing... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether icc -std=gnu99 accepts -g... yes checking for icc -std=gnu99 option to accept ISO C89... none needed checking for mpirun... mpirun checking for mpiexec... mpiexec checking for orterun... orterun checking for sed... /bin/sed checking for mpicc... mpicc checking for ompi_info... ompi_info checking for mpich2version... F found sed, mpicc, and ompi_info ... >> TMP_INC_DIRS = /opt/openmpi/1.6.4-1/intel-13.1.1/include checking /opt/openmpi/1.6.4-1/intel-13.1.1/include ... found...

...t the updated Debian package of Rmpi (i.e. r-cran-rmpi) under R 2.6.0 but I cannot convince myself yet whether it works or not. Simple tests work. E.g. on my Debian testing box, with Rmpi installed directly using Open Mpi 1.2.3-2 (from Debian) and using 'r' from littler: edd at ron:~> orterun -np 3 r -e 'library(Rmpi); print(mpi.comm.rank(0))' [1] 0 [1] 1 [1] 2 edd at ron:~> but I basically cannot get anything more complicated to work yet. R / Rmpi just seem to hang, in particular snow and and getMPIcluster() just sit there: > cl <- makeSOCKcluster(c("localhos...

Dear R People: I'm having some trouble with mpiexec and Rmpi. I would like to be able to pass in the number of "children" via the mpiexec command (from the command line). this is in SUSE10.1, with R-2.7.1 Here are my files: cat eb.R library(Rmpi) mpi.remote.exec(paste("i am",mpi.comm.rank(),"of",mpi.comm.size())) mpi.quit() hodgesse at

...g it to handle an arbitrary number of tasks in a memory efficient way. The package includes a number of example scripts and an introductory vignette, in addition to the standard help documentation. The vignette also attempts to explain how to run "doMPI" scripts using the Open MPI "orterun" command, which I hope helps people who are new to "Rmpi" get started running parallel R programs. - Steve Weston _______________________________________________ R-packages mailing list R-packages at r-project.org https://stat.ethz.ch/mailman/listinfo/r-packages

Hi all! I have a quad core computer and I'd like to run some Rmpi code. However, I would like to be able to demonstrate that all 4 cores are running. Is there a way to do that, please? Also, would it be better to run snow for such a demo, please? thanks, Erin -- Erin Hodgess Associate Professor Department of Computer and Mathematical Sciences University of Houston - Downtown mailto:

Dear R Debian Users: I wrote a quick C program (eventually to become R code) and compiled it as: mpicc -o greet greet.c So far so good. Now when I run mpirun, this happens: erin at erin-laptop:~$ mpirun -np 2 greet ----------------------------------------------------------------------------- It seems that there is no lamd running on the host erin-laptop. This indicates that the LAM/MPI

...g it to handle an arbitrary number of tasks in a memory efficient way. The package includes a number of example scripts and an introductory vignette, in addition to the standard help documentation. The vignette also attempts to explain how to run "doMPI" scripts using the Open MPI "orterun" command, which I hope helps people who are new to "Rmpi" get started running parallel R programs. - Steve Weston _______________________________________________ R-packages mailing list R-packages at r-project.org https://stat.ethz.ch/mailman/listinfo/r-packages

I have a network of four machines set up. I'm having trouble spawning my slaves on these machines. All the examples I have found so far use makeCluster with type="MPI", and I guess I'm missing some kind of cluster configuration in my environment variables because all my clusters are formed on the machine where my initial session is running. Can anyone refer me to a link that