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optind
2012 Aug 07
1
how to write out a tree file with bootstrap from phangorn package
...give me any
directions on that? Thanks in advance.
Best wishes,
Jian-Feng,
########
# as a example
# I accomplished 1000 bootstrap simulation on a fit object (a maximum
likelihood tree object)
# how could I output a tree in newick format for tuning outside R?
bs <- bootstrap.pml(fit, bs=1000, optNni=T, optInv=T, multicore=T)
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