search for: operon

HI, Dear R community, My original file has 1932 lines, but when I read into R, it changed to 1068 lines, how comes? cdu@nuuk:~/operon$ wc -l id_name_gh5.txt 1932 id_name_gh5.txt > gene_name<-read.table("/home/cdu/operon/id_name_gh5.txt", sep="\t", skip=0, header=F, fill=T) > dim(gene_name) [1] 1068 3 -- Sincerely, Changbin -- Changbin Du DOE Joint Genome Institute Bldg 400 Rm 457 2800 Mitchel...

Dear community, I have one file named ca_boost_feature.txt, Feature selection (Boosting:0.0025,5)! H.2.C C.1.D C.3.R E.0.N C.2.S C.0.G H.3.G log file: ep If I want to use the second line of this file, how to read it into R? varr<-read.table("/home/cdu/operon/carbonic/ca_boost_feature.txt", sep=" ", skip=1, header=F, strip.white=TRUE, nrows=1) Warning message: In read.table("/home/cdu/operon/carbonic/ca_boost_feature.txt", : incomplete final line found by readTableHeader on '/home/cdu/operon/carbonic/ca_boost_feature.txt&...

...1, b111, ..z111.. IF I dont know the relative position of the columns, but I know I need the following variables: var<-c(a1, c1,a11,b11,f111) Can I use read.columns to read the data into R? I have tried the following codes, but it does not work hh<-read.columns("/house/homedirs/c/cdu/operon/gh/dd.dimer", required.col=NULL, text.to.search=var, sep="\t", skip=0, quote="", fill=T) dim(hh) 468, 2402 hh<-read.columns("/house/homedirs/c/cdu/operon/gh/dd.dimer", required.col=var, text.to.search="", sep="\t", skip=0, quote="&qu...

Hi, I'm using which to find the position of a value in my data table, and it is returning the correct position and the position of another number that differs by an extra decimal place. For example, when I do: where1<-which(Operons==3573.1,arr.ind=TRUE) it returns the position of that number and of 3573.15. Is it possible to get the function to only return a position if the number matches exactly? Thanks, -Nina

...ached my output, the left one dont have any labels in the note, the right one has more than one label in each note. I need to have only one label for each note either by majority vote or prediction. Can anyone give some suggestions or advice? Thanks so much! alex<-read.table("/home/cdu/operon/alex2.txt", , sep="\t", skip=0, header=T, fill=T) alex1<-alex[,c(1:257)] levels(alex1$Label) alex1$outcome<-as.numeric(alex1$Label) alex1$outcome[1:20] #self-organizing maps(unsupervised learning) library("kohonen") #SOM, the supervised learning, train the map us...

...d be really > > grateful to hear that. > > Hi, Eleni. The probeNames() function is not applicable here, > unfortunately. You are asking a question related to annotating your > array. Therefore, you need an annotation package. I think the IDs > that you specified are Qiagen (Operon) IDs, so the place to look is in > the annotation package associated with the Qiagen arrays: > > Assuming that you are using R 2.7.0 (you are, correct?), then you can do: > > source('http://bioconductor.org/biocLite.R') > biocLite('hguqiagenv3.db') > library(hgu...

...POSTECH 02:00 -- 3:30 Session 1b Life Sciences ?02:00 -- 2:30 A-Brain: Using the Cloud to Understand the Impact of Genetic Variability on the Brain, Alexandru Costan, Radu Tudoran, Benoit Da Mota, Gabriel Antoniu and Bertrand Thirion, INRIA Rennes and Saclay ?02:30 -- 3:00 Very Large Scale Operon Predictions via Comparative Genomics, Ehsan Tabari, ZhengChang Su, UNC Charlotte ?03:00 -- 3:30 Fast Exploration of the QSAR Model Space with e-Science Central and Windows Azure, Jacek Cala, Hugo Hiden, Simon Woodman, Paul Watson, Newcastle University 03:30 - 04:00 Break 04:00 - 05:30 Ses...

...POSTECH 02:00 -- 3:30 Session 1b Life Sciences ?02:00 -- 2:30 A-Brain: Using the Cloud to Understand the Impact of Genetic Variability on the Brain, Alexandru Costan, Radu Tudoran, Benoit Da Mota, Gabriel Antoniu and Bertrand Thirion, INRIA Rennes and Saclay ?02:30 -- 3:00 Very Large Scale Operon Predictions via Comparative Genomics, Ehsan Tabari, ZhengChang Su, UNC Charlotte ?03:00 -- 3:30 Fast Exploration of the QSAR Model Space with e-Science Central and Windows Azure, Jacek Cala, Hugo Hiden, Simon Woodman, Paul Watson, Newcastle University 03:30 - 04:00 Break 04:00 - 05:30 Ses...

Hi, I tried to configure the new idmap interface. Currently without much success. I have two samba domains, trusting each other. Each PDC using it's own LDAP server. I tried idmap domains = DOM1, DOM2 idmap config DOM1:default = yes idmap config DOM1:backend = ldap idmap config DOM1:ldap_base_dn = ou=Idmap,dc=dom1,dc=mydomain,dc=de idmap config

HI, Dear R community, I have one data set like this, What I want to do is to calculate the cumulative coverage. The following codes works for small data set (#rows = 100), but when feed the whole data set, it still running after 24 hours. Can someone give some suggestions for long vector? id reads Contig79:1 4 Contig79:2 8 Contig79:3 13 Contig79:4 14 Contig79:5 17