Displaying 1 result from an estimated 1 matches for "nrse".
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nrpe
2009 Jun 20
1
string splitting and testing for enrichment
...T4(57) HEB(251)
TAF12 PAX3(53) YY1(92) BRCA(99) GLI(101)
EIF3I NERF(10) P300(10)
TRAPPC3 HIC1(3) PAX5(17) PAX5(110) NRF1(119) HIC1(122)
TRAPPC3 EGR(26) ZNF219(27) SP3(32) EGR(32) NFKAPPAB65(89) NFKAPPAB(89) RFX(121) ZTA(168)
NDUFS5 WHN(14) ATF(57) EGR3(59) PAX5(99) SF1(108) NRSE(146)
TIE1 NRSE(129)
I would like to test the 2nd column (each value has letters followed by numbers in brackets) here for enrichment via fisher.test.
To that end I am trying to create two factors made up of column 1 (Gene) and column 2 (TFBS) where each Gene would have several entries match...