search for: npopinit

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2009 Jan 13
3
problem whit Geneland
...- data$genotypes coord <- t(data$coord.indiv) path.mcmc <- paste(tempdir(),"/",sep="") set.seed(1) mcmcFmodel(coordinates=coord, genotypes=geno, path.mcmc=path.mcmc, rate.max=10, delta.coord=0, npopmin=1, npopinit=5, npopmax=5, nb.nuclei.max=50, nit=500, thinning=1, freq.model="Dirichlet", varnpop=FALSE, spatial=TRUE) But at the end R say to me that  do had found the function "mcmcFmodel". Any sugestion? thanks...
2010 May 20
1
Geneland error on unix: Error in MCMC(........ :, unused argument(s) (ploidy = 2, genotypes = geno)
...coord<-read.table(XY.TABLE) + + ## Loop for multiple runs + + for(irun in 1:nrun) + { + ## define path to MCMC directory + + path.mcmc <- paste(path.sp,irun,"/",sep="") + dir.create(path.mcmc) + MCMC(coordinates=coord, ploidy=2, genotypes=geno, varnpop=T, npopmax=MAXPOP, npopinit=MINPOP, spatial=T, freq.model="Correlated", nit=NITS, thinning=500, rate.max=nrow(geno), delta.coord=100, path.mcmc=path.mcmc) + ## MCMC postprocessing + PostProcessChain(coordinates=coord,path.mcmc=path.mcmc,genotypes=geno, nxdom=50,nydom=50,burnin=burnin) + } + ## Computing average p...