search for: npermut

Dear List, I have a table i have read into R: Name Yes/No John 0 Frank 1 Ann 0 James 1 Alex 1 etc - 800 different times. What i want to do is shuffle yes/no and randomly re-assign them to the name. I have used sample() and permute(), however there is no way to do this 1000 times. Furthermore, i want to copy the data into a excel spreadsheet in the same order as the data was input so i can

...#39;m using R2.13 Can you help me? Do you know, what is happens? Thanks Raquel multiExpr = list(A = list(data=t(badea)),B = list(data=t(mayo))) # two independent datasets (dim = 13447 x 36) mp = modulePreservation(multiExpr,multiColor,referenceNetworks=1,verbose=3,networkType="signed",nPermutations=2,maxGoldModuleSize=100,maxModuleSize=400) ..checking data for excessive amounts of missing data.. Flagging genes and samples with too many missing values... ..step 1 Flagging genes and samples with too many missing values... ..step 1 ..unassigned 'module...

...x.php?option=com_content&view=article&id=90&Itemid=85. The R I used is R-2.15.1 in the Windows XP system. The command lines I have run are as follows: # data files pedfile="pedigree1.ped" phenofil="pheno1.dat" mapfile="simulation.map" # solver settings npermute = 1000 # fixed number of permutations, 1000 is recommended alpha = 0.05 # type-I error Pval = 0.1 # significance level at first step of mbmdr set.seed(1982) # for reproducibility # loading libraries and code libr...