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Dear R-users I am trying to understand how Sweave works by running some simple examples. In the example I am working with there is a chunk where the R-commands related to plotting a figure are placed. When running R CMD Sweave ? , pdflatex the output is a portrait figure. I wonder whether it would be possible to change the orientation to landscape (not in the latex file but in Rnw file). Many

...2.2 foreign_0.8-49 chron_2.3-42 MASS_7.3-17 latticeExtra_0.6-19 RColorBrewer_1.0-5 [9] lattice_0.20-6 loaded via a namespace (and not attached): [1] tools_2.15.0 Duncan Mackay Department of Agronomy and Soil Science University of New England ARMIDALE NSW 2351 Email home: mackay at northnet.com.au

...ot;--include-directory=d:/Cic/Sweave/Figs/Sheep3/FS/14") and other variants Any guide on how to specify the output directory would be greatly appreciated. Regards Duncan Duncan Mackay Department of Agronomy and Soil Science University of New England Armidale NSW 2351 Email: home: mackay at northnet.com.au

...xpr = x+ value*x^2, groups, from = -2, to = 2) } ) I tried my one panel function but came up with more error messages so have omitted it. Regards Duncan Duncan Mackay Department of Agronomy and Soil Science University of New England ARMIDALE NSW 2351 Email home: mackay at northnet.com.au

...d was on top using http://finzi.psych.upenn.edu/R/Rhelp02/archive/46654.html on something similar but could not get it to work in the last panel of a multipanel plot. Regards Duncan Mackay Department of Agronomy and Soil Science University of New England Armidale NSW 2351 Email: home mackay at northnet.com.au R version 2.12.1 (2010-12-16) Platform: i386-pc-mingw32/i386 (32-bit) locale: [1] LC_COLLATE=English_Australia.1252 LC_CTYPE=English_Australia.1252 LC_MONETARY=English_Australia.1252 [4] LC_NUMERIC=C LC_TIME=English_Australia.1252 attached base packages: [1] splin...

Dear all, I am trying to export my fixed effect results to Latex. I am using the plm package with the summary function. However, it does not look like apsrtable, stargazer, or any other package can accompany using the plm package. I am interested in a classic table with the coefficient in one row followed by the standard error in paranthesis in the next row and stars by the coefficient to show

I would like to use lattice graphics to plot multiple functions (or groups or subpopulations) on the same plot region, using different line types "lty" or colors "col" to distinguish the functions (or groups). In traditional graphics, this seems straightforward: First plot all the data using 'type="n"', and subsequently execute a series of "points"

Good afternoon, I would like to ask for help in controlling y-axis limits and labels in lattice doplots. Unfortunately, the problem is somewhat convoluted, please bear with the long explanation. I would like to create a 3x3 lattice of dotplots, say subject ~ count. The plot is conditioned on variables treatment and risk: subject ~ count | treatment + risk. In the experiment, not all subjects

...panel.xyplot(x,y,...) panel.Locfit(x,y,...) # default 0.7 panel.Locfit(x,y,nn=0.9,...) } ) ## xyplot Regards Duncan At 02:12 20/04/2012, you wrote: >On Thu, Apr 19, 2012 at 2:30 AM, Duncan Mackay <mackay at northnet.com.au> wrote: > > Hi > > > > xyplot(y ~x|Farm,xx, > > groups = Padd, > > panel = panel.superpose, > > panel.groups=function(x,y, ...){ > > panel.Locfit(x,y,...) > > panel.xyplo...

Hi all I am preparing a document using Sweave; a really useful tool. But I am having a problem. Consider this toy example Sweave file: \documentclass{article} \begin{document} <<echo=TRUE,results=verbatim>>= options(width=40) # Set width to 40 characters hide <- capture.output(example(glm)) # Create an example of the problem, but hide the output summary(glm.D93) #

Dear all, When defining explicit keys with xyplot, I have previously used the fill parameter to set the background colour of point symbols. That's no longer working for me, and I am wondering whether it's a bug or whether I've misinterpreted the documentation and have been relying on a feature wasn't intended. If the latter, can anyone suggest the correct way to do it?

Dear all: Is there any one could tell me how I can represent Micro-molar as an unit of concentration when I plot with R(S-plus), I don't want write 'uM' from keyboard, I am thinking to write it like in word, in word, people insert symbol for 'u' for uM. Am I clear? Thank you very much for your consideration and help. Lu

Dear all, I would like to have the same color for the all boxplots from the same panel, but my code below shows the two colors alternating. Thanks! set.seed(42) D1 <- rnorm(200) D2 <- factor(sample(letters[1:2],200,TRUE)) D3 <- factor(sample(letters[3:5],200,TRUE)) DF <- data.frame(x=D1,a=D2,b=D3) print(bwplot(b~x|a,data=DF,col=c("black","black"),

Hi! When inserting R plots into a document using odfWeave, I fought for a while to get Lattice plots use the same text size as base plots. I eventually discovered that specifying a point size via e.g. svg(pointsize=10) has no effect on Lattice plots. One needs to adjust the size manually via: trellis.par.set(fontsize=list(text=10, points=8)) This is also developed for both Lattice and ggplot2 by

Hello, I am trying to convert the following command from SPLUS to R: graphsheet(pages = TRUE) Does anyone have an idea what is the equivalent in R? Thanks -- View this message in context: http://www.nabble.com/graphsheet-tp19026010p19026010.html Sent from the R help mailing list archive at Nabble.com.

Hi everyone, I would like to improve my plot and I was wondering if someone can help me whith it. I'm trying this plot using two groups, but I want to choice the colors (the black and white circles) but I don't know how to change it from here. These are my sentences: myplot3d<- scatterplot3d(myfile$Temperature, acantarcthus$Salinity,myfile$Abundance, type="h",    color =

Hi all,   I have data set with repeated measurement ordinal responses and I would like it using generalized linear mixed model.   Shall I use MCMCglmm packeage or I can use lme4 package?   waiting for  answer eagerly, [[alternative HTML version deleted]]

I have 120 MS chromatograms containing two columns'Time' and 'Peak height'. how do in create a msSet file which is required by all the functions of 'msProcess' to process these files. I would appreciate help very much. Thanks Sharad -- View this message in context: http://r.789695.n4.nabble.com/msProcess-creating-msSet-file-s-tp3727959p3727959.html Sent from the R help

Hi, Is there a way to do it? For example I have the following vector: > print(myvector) > [1] -295.8045 -295.8045 -295.8045 -295.8045 -325.4754 -295.8045 -295.8045 [8] -295.8045 -413.2099 -295.8045 I want it to return -295.8045, which occur most often. - Gundala Viswanath Jakarta - Indonesia

Hello: I am using Sweave to generate a PDF with figures and tables and was wondering if is possible to carry on table headers and some kind of caption like 'Continued' to the next PDF page when creating long tables. Felipe D. Carrillo Supervisory Fishery Biologist Department of the Interior US Fish & Wildlife Service California, USA