Displaying 1 result from an estimated 1 matches for "normalvstumor".
2011 Nov 22
2
filtering probesets with Bioconductor?
...this? I have looked into
using the genefilter() function but can't figure out if it can take the
right parameters (i.e. specific probe set id's).
Thanks in advance,
-M
This is the code I used to generate my topTable
> fit <- lmFit(eset, design)
> cont.matrix <- makeContrasts(NormalvsTumor=Tumor-Normal, levels=design)
> fit2 <- contrasts.fit(fit, cont.matrix)
> fit2 <- eBayes(fit2)
> topTable(fit2, number=100, adjust="BH")
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