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Thank you Martyn, I am one step closer. Using R-patched, configure was successful. However, make exited with an error. Configure summary: Installation directory: /usr/local C compiler: /opt/sun/sunstudio12.1/bin/suncc -g -O -xc99 -xlibmil -m32 -xlibmieee -nofstore Fortran 77 compiler: /opt/sun/sunstudio12.1/bin/sunf95 -g -O -libmil -m32 -nofstore C++ compiler: /opt/sun/sunstudio12.1/bin/sunCC -g -O -xlibmil -m32 -xlibmieee -nofstore Fortran 90/95 compiler: /opt/sun/sunstudio12.1/bin/sunf95 -g -O -libmil -m32 -nofstore Obj-C...

...failed for package ?Matrix? * Removing ?/home/user/R/R-devel/library/Matrix? Can someone help me or give me a pointer what I'm making wrong? How can I get/include the missing shared library? Many thanks in advance Thomas Petzoldt #file: config.site CC=cc CFLAGS="-xO5 -xc99 -xlibmil -nofstore" CPICFLAGS=-Kpic F77=f95 FFLAGS="-O5 -libmil -nofstore" FPICFLAGS=-Kpic CXX=CC CXXFLAGS="-xO5 -xlibmil -nofstore" CXXPICFLAGS=-Kpic FC=f95 FCFLAGS=$FFLAGS FCPICFLAGS=-Kpic LDFLAGS=-L/opt/sun/sunstudio12/lib/amd64 SHLIB_LDFLAGS=-shared SHLIB_CXXLDFLAGS="-G -lCstd"...

...time" #LD_PRELOAD_64=/usr/lib/amd64/libmtmalloc.so LDFLAGS="-L/opt/yp/lib -R/opt/yp/lib -L/usr/sfw/lib/64 -R/usr/sfw/lib/ 64 -L/usr/ sfw/lib -R/usr/sfw/lib -L/usr/lib/64 -R/usr/lib/64 -L/usr/lib -R/usr/ lib" # Compiler Flags #CFLAGS="-m64 -xarch=sse2 -fns -fsimple=2 -fsingle -nofstore - xalias_level=basic -xbuiltin=%all -xdepend -xlibmil -xlibmopt -xO5 -xregs=frameptr -mt - lpthread" CXX=CC #CXXFLAGS="-m64 -xarch=sse2 -fns -fsimple=2 -fsingle -nofstore - xalias_level=bas ic -xbuiltin=%all -xdepend -xlibmil -xlibmopt -xO5 -xregs=frameptr -mt -lpthread " #CFLAG...

I am trying to compile R on Linux using SunStudio. Configure flags are mostly as suggested in the R install guide. CC=/opt/sun/sunstudio12.1/bin/suncc CFLAGS="-g -xc99 -xlibmil -xlibmieee" MAIN_CFLAGS=-g SHLIB_CFLAGS=-g CPPFLAGS="-I. -I/opt/sun/sunstudio12.1/prod/include -I/opt/sun/sunstudio12.1/prod/include/cc" CPPFLAGS+="-I/opt/sun/sunstudio12.1/prod/include/cc/sys

...dmake: defaulting to parallel mode. See the man page dmake(1) for more information on setting up the .dmakerc file. /opt/studio12/SUNWspro/bin/cc -m64 dmake: defaulting to parallel mode. See the man page dmake(1) for more information on setting up the .dmakerc file. -xO5 -xc99 -xlibmieee -xlibmil -nofstore conftest.c >&5 ./configure: line 1626: dmake:: command not found configure:1628: $? = 127 configure: failed program was: | /* confdefs.h. */ | | #define PACKAGE_NAME "" | #define PACKAGE_TARNAME "" | #define PACKAGE_VERSION "" | #define PACKAGE_STRING &quo...

...e on CRAN's Solaris testbed, but I don't have access to a Solaris system to debug on, and Googling the error hasn't been very helpful. The error is CC -library=stlport4 -I/home/ripley/R/cc/include -DNDEBUG -DNDEBUG -DRNIFTYREG -I/usr/local/include -KPIC -O -xlibmil -xtarget=native -nofstore -c niftyreg.cpp -o niftyreg.o "_reg_f3d_sym.cpp", line 25: Error: reg_f3d may not have a type qualifier. "niftyreg.cpp", line 527: Where: While instantiating "reg_f3d_sym<double>::reg_f3d_sym(int, int)". "niftyreg.cpp", line 527: Where: Instan...

Hi all. I've recently uploaded a package (bnlearn) to CRAN. It builds fine on both Linux (32 and 64 bit) and Windows, but fails on MacOSX ix86 because of C90 vs C99 issues: http://www.r-project.org/nosvn/R.check/r-patched-macosx-ix86/bnlearn-00install.html Since I've no MacOSX machine at hand, I would like to ask you: why is C99 not the default for gcc on MacOSX ix86? Is it safe to