Displaying 1 result from an estimated 1 matches for "nnnnnnnnnnntgcgcgcgaacggcgggagt".
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nnnnnnnnnnnngcgcgcgaacggcgggagt
2010 Jun 24
1
how to group a large list of strings into categories based on string similarity?
...CTCCCGCCGTTCGCGCGCAGCATGATCCTG
ACTCCCGCCGTTCGCGCGCNNNNNNNNNNNN
CAGGATCATGCTGCGCGCGAACGGCGGGAGT
CAGGATCATGCTGCGCGCGAANNNNNNNNNN
CAGGATCATGCTGCGCGCGNNNNNNNNNNNN
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NNNNNNNCCGTTCGCGCGCAGCATGATCCTG
NNNNNNNNNNNNCGCGCGCAGCATGATCCTG
NNNNNNNNNNNNGCGCGCGAACGGCGGGAGT
NNNNNNNNNNNNNNCGCGCAGCATGATCCTG
NNNNNNNNNNNTGCGCGCGAACGGCGGGAGT
NNNNNNNNNNTTCGCGCGCAGCATGATCCTG
'N' is the missing letter
It can be seen that some strings are the same except for those N's
(i.e. N can match with any base)
given this list of string, I want to have
1) a vector corresponding to each row (string), for each string assign
an id, such...