search for: nnnnnnnnnnnncgcgcgcagcatgatcctg

Displaying 1 result from an estimated 1 matches for "nnnnnnnnnnnncgcgcgcagcatgatcctg".

2010 Jun 24
1
how to group a large list of strings into categories based on string similarity?
...s based on string similarity? The specific problem is: given a list of DNA sequence as below ACTCCCGCCGTTCGCGCGCAGCATGATCCTG ACTCCCGCCGTTCGCGCGCNNNNNNNNNNNN CAGGATCATGCTGCGCGCGAACGGCGGGAGT CAGGATCATGCTGCGCGCGAANNNNNNNNNN CAGGATCATGCTGCGCGCGNNNNNNNNNNNN ...... ..... NNNNNNNCCGTTCGCGCGCAGCATGATCCTG NNNNNNNNNNNNCGCGCGCAGCATGATCCTG NNNNNNNNNNNNGCGCGCGAACGGCGGGAGT NNNNNNNNNNNNNNCGCGCAGCATGATCCTG NNNNNNNNNNNTGCGCGCGAACGGCGGGAGT NNNNNNNNNNTTCGCGCGCAGCATGATCCTG 'N' is the missing letter It can be seen that some strings are the same except for those N's (i.e. N can match with any base) given this list of string, I w...