search for: nico902

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2011 Sep 21
4
chippeakanno package: "getAllPeakSequence" problem
Hi all, I am using the package ChIPpeakAnno, and I have a problem with the function getAllPeakSequence. This is related to object oriented programming I think, I have the following message: > peaksWithSequences <- getAllPeakSequence(peakList, upstream = 100, > downstream = 100, genome = Hsapiens) Error in validObject(.Object) : invalid class "GRanges" object: superclass
2011 Sep 03
2
mclust: modelNames("E") vs modelNames=("V")
Hi, I'm trying to use the library mclust for gaussian mixture on a numeric vector. The function Mclust(data,G=3) is working fine but the fitting is not optimal and is using modelNames="E". When I'm trying Mclust(data,G=3,modelName="V") I have the following message: Error in if (Sumry$G > 1) ans[c(orderedNames, "z")] else ans[orderedNames] : argument is
2011 Sep 04
2
mclust: modelName="E" vs modelName="V"
Hi, I'm trying to use the library mclust for gaussian mixture on a numeric vector. The function Mclust(data,G=3) is working fine but the fitting is not optimal and is using modelNames="E". When I'm trying Mclust(data,G=3,modelName="V") I have the following message: Error in if (Sumry$G > 1) ans[c(orderedNames, "z")] else ans[orderedNames] : argument is
2011 Sep 24
1
help
...the list at > r-help-owner at r-project.org > > When replying, please edit your Subject line so it is more specific > than "Re: Contents of R-help digest..." > > > Today's Topics: > > 1. Re: chippeakanno package: "getAllPeakSequence" problem (Nico902) > 2. Re: How make a x,y dataset from a formula based entry > (Helios de Rosario) > 3. Re: writing data from several matrices in R into one > excel-file with several sheets (Marion Wenty) > 4. Significance test (setrofim) > 5. Re: Subsetting a zooreg...