search for: netcdf_incdir

...out a command line work around: # R CMD INSTALL ncdf_1.5.tar.gz [...] checking /sw/include/netcdf.h presence... no checking for /sw/include/netcdf.h... no Fatal error: I cannot find the directory that holds the netcdf include file netcdf.h! You can specify it as follows: ./configure --with-netcdf_incdir=directory_with_file_netcdf.h *** Special note for R CMD INSTALL users: ********************************* The syntax for specifying multiple --configure-args does not seem to be well documented in R. If you have installed the netcdf include and library directories in some non-stand...

...NT about a command line work around: # R CMD INSTALL ncdf_1.5.tar.gz [...] checking /sw/include/netcdf.h presence... no checking for /sw/include/netcdf.h... no Fatal error: I cannot find the directory that holds the netcdf include file netcdf.h! You can specify it as follows: ./configure --with-netcdf_incdir=directory_with_file_netcdf.h *** Special note for R CMD INSTALL users: ********************************* The syntax for specifying multiple --configure-args does not seem to be well documented in R. If you have installed the netcdf include and library directories in some non-standard location,...

...-config-vars") on the R CMD INSTALL line. In such a case, no error message is generated, but the first specification is silently overwritten by the second specification. The process therefore fails. So for instance, a user contacted me after typing this: R CMD INSTALL --configure-args=-with-netcdf_incdir=/usr/local/netcdf/include --configure-args=-with-netcdf_libdir=/usr/local/netcdf/lib ncdf_1.1.tar.gz and it failed (they contacted me because I'm the maintainer of the ncdf package). I would say that this is both a bug and something that needs more documentation. It's a bug because it ac...

...ers/stephen/src/netcdf/netcdf-3.4/src/libsrc/netcdf.h presence... no checking for /iwi200/home/users/stephen/src/netcdf/netcdf-3.4/src/libsrc/netcdf.h... no Fatal error: I cannot find the directory that holds the netcdf include file netcdf.h! You can specify it as follows: ./configure --with-netcdf_incdir=directory_with_file_netcdf.h *** Special note for R CMD INSTALL users: ********************************* The syntax for specifying multiple --configure-args does not seem to be well documented in R. If you have installed the netcdf include and library directories in some non-stand...

...library/") cd /home/user/soft/R/library R CMD INSTALL ncdf_1.6.tar.gz # fail sudo R CMD INSTALL ncdf_1.6.tar.gz # fail cd /home/user/soft/ # download http://www.unidata.ucar.edu/downloads/netcdf/ftp/netcdf-4.0.1.tar.gz tar -xzvf netcdf-4.0.1.tar.gz R CMD INSTALL --configure-args="-with-netcdf_incdir=/home/user/soft/netcdf-4.0.1/libsrc -with-netcdf_libdir=/home/user/soft/netcdf-4.0.1/libsrc/" ncdf_1.6.tar.gz # Error: user specified netCDF library directory does not have libnetcdf.a ! Thank you very much for your kind help. [[alternative HTML version deleted]]

...64 x86_64 x86_64 GNU/Linux I have run the installation instructions found at "http://www.image.ucar.edu/Software/Netcdf/", but not successfully. I'm wondering if you can give some advice that will change our outcome? We've run "R CMD INSTALL --configure-args="-with-netcdf_incdir=/usr/local/netcdf-3.6.1/include -with-netcdf_libdir=/usr/local/netcdf-3.6.1/lib" ncdf_1.6.tar.gz" against NetCDF 3.6.1, 3.6.2, and 4.0 all with the same results. I think our being on a 64-bit Linux has to do with the failure. Can you confirm this? Outputs are below from the 64-bit sy...

Friends, I am a newbie to R. Just installed and started with R. I installed netcdf library (netcdf-4.0.tar.gz) and then ncdf package of R from CRAN with the following command. R CMD INSTALL --configure-args="-with-netcdf_incdir=/usr/local/netcdf/include -with-netcdf_libdir=/usr/local/netcdf/lib" ncdf_1.6.tar.gz The installation was successful. But when i try to use ncdf inside R, i get the following error. Kindly help me how to resolve the problem. > trjfile<-system.file('test.netcdf',package='bio...

Friends, I tried to install ncdf package in ubuntu with the following command. R CMD INSTALL --configure-args="-with-netcdf_incdir=/apps/netcdf/4.0.1/gcc/include -with-netcdf_libdir=/apps/netcdf/4.0.1/gcc/lib" ncdf_1.6.tar.gz The installation was stopped throwing the following error. I tried to google it but didnt find any solution. someone kindly write me what is going wrong. ** libs gcc -std=gnu99 -I/usr/share/R/inclu...

...#39;m on a debian linux 64bit, i'm tying to install the netcdf intraface, i tried both ncdf and ncdf4 but trying to build i received the error : (i have necdf installed on my machine and it is able to fiund it .. no missed .h) epy at epinux:~$ sudo R CMD INSTALL --configure-args="-with-netcdf_incdir=/usr/include -with-netcdf_libdir=/usr/lib" ncdf4_1.8.tar.gz * installing to library ?/usr/local/lib/R/site-library? * installing *source* package ?ncdf4? ... checking for nc-config... yes Using nc-config: nc-config Output of nc-config --all: This netCDF 4.2.1.1 has been built with the follow...

Hi All, I am trying to install ncdf package on a Linux 64-bit machine. I successfully installed netcdf using this command, ./configure --prefix=/home/challar/netcdf/ --disable-netcdf4 I then tried to install ncdf package in R R CMD INSTALL --configure-args="-with-netcdf_incdir=/home/challar/netcdf/include -with-netcdf_libdir=/home/challar/netcdf/lib" ncdf_1.6.3.tar.gz I get this output below * installing to library â/home/challar/R/R-2.11.1/libraryâ * installing *source* package âncdfâ ... checking for gcc... gcc -std=gnu99 checking for C compiler default output f...

...1 That got past the X check, but then I got this error: checking for /sw/include/netcdf.h... no Fatal error: I cannot find the directory that holds the netcdf include file netcdf.h! A bit more digging and success with: ./configure --x-libraries=/usr/lib64 --x-includes=/usr/include/X11 --with-netcdf_incdir=/usr/include/netcdf-3 I'm still not sure exactly which X libraries were required in addition to the header package (xorg-x11-proto-devel-7.1-13.el5). Fedora has (used to have?) an rpm for ncview, I wish centos did. best, Dave p.s. I figured out where the 'X headers' were by using thi...

...#39;m on a debian linux 64bit, i'm tying to install the netcdf intraface, i tried both ncdf and ncdf4 but trying to build i received the error : (i have necdf installed on my machine and it is able to fiund it .. no missed .h) epy at epinux:~$ sudo R CMD INSTALL --configure-args="-with-netcdf_incdir=/usr/include -with-netcdf_libdir=/usr/lib" ncdf4_1.8.tar.gz * installing to library ?/usr/local/lib/R/site-library? * installing *source* package ?ncdf4? ... checking for nc-config... yes Using nc-config: nc-config Output of nc-config --all: This netCDF 4.2.1.1 has been built with the follow...