Displaying 2 results from an estimated 2 matches for "nestedf".
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nested
2007 Jul 30
0
problems in limma
...1 0 0
plateau 0 1 0
PLATEAU 0 -1 1
> fit2MA.pi<-contrasts.fit(fitMA.pi,contrast.matrix)
> fit2MA.pi<-eBayes(fit2MA.pi)
> resultsi.001.fc2=decideTests(fit2MA.pi,method="nestedF",adjust.method="BH",p.value=0.001,lfc=log2(2))
write.fit(fit2MA.pi,
results=decideTests(fit2MA.pi,method="nestedF",adjust.method="BH",p.value=0.001,lfc=1),
"fit2MA.pi.nestedF.adj_BH.P_001.FC_2.csv", digits=4, adjust="BH",
sep=",")
>...
2006 Apr 28
1
limma - OneWayAnova
I have a very basic question about limma.
Assume I have experiments from 3 or more RNA sources in a reference
design. It is easy to define individual contrasts but I want to specify a
contrast matrix that tests for significant differences among ALL the
different RNA sources (i.e. the analogous thing to a simple One-Way ANOVA).
How can I do that?
Thanks!
Max
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