search for: necsulea

...lyon1.fr/software/SeqinR/SEQINR_CRAN/DOC/html/crelistfromclientdata.html o A new function pmw() to compute the molecular weight of a protein is now available. http://pbil.univ-lyon1.fr/software/SeqinR/SEQINR_CRAN/DOC/html/pmw.html o A new function reverse.align() contributed by Anamaria Necsulea is now available to align CDS at the protein level and then reverse translate this at the nucleic acid level from a clustalw output. This can be done on the fly if clustalw is available on your platform. http://pbil.univ-lyon1.fr/software/SeqinR/SEQINR_CRAN/DOC/html/reverse.align.html...

...lyon1.fr/software/SeqinR/SEQINR_CRAN/DOC/html/crelistfromclientdata.html o A new function pmw() to compute the molecular weight of a protein is now available. http://pbil.univ-lyon1.fr/software/SeqinR/SEQINR_CRAN/DOC/html/pmw.html o A new function reverse.align() contributed by Anamaria Necsulea is now available to align CDS at the protein level and then reverse translate this at the nucleic acid level from a clustalw output. This can be done on the fly if clustalw is available on your platform. http://pbil.univ-lyon1.fr/software/SeqinR/SEQINR_CRAN/DOC/html/reverse.align.html...

All, Recently I ran across a URL documenting published research using R: http://www.cgd.ucar.edu/ccr/ammann/millennium/CODES_MBH.html A note on the site indicates that the code is being revised. The code and data are provided, so that one could reproduce the results without having to buy a proprietary software program. In poking around the R website it is clear that a lot of thought has gone

...or eukaryotic sequences, i.e. with introns. The output file will contain the coordinates of the exons, along with the name of the CDS to which they belong. o After an e-mail by Marcelo Bertalan on 26 Mar 2007, a bug in oriloc() when the gbk argument was NULL was found and fixed by Anamaria Necsulea. o Functions translate() and getTrans() have gained a new argument NAstring to represent untranslatable amino-acids, defaulting to character "X". o There was a typo for the total number of printed bases in the ACNUC books: 474,439 should be 526,506. o Function invers() has been d...

...or eukaryotic sequences, i.e. with introns. The output file will contain the coordinates of the exons, along with the name of the CDS to which they belong. o After an e-mail by Marcelo Bertalan on 26 Mar 2007, a bug in oriloc() when the gbk argument was NULL was found and fixed by Anamaria Necsulea. o Functions translate() and getTrans() have gained a new argument NAstring to represent untranslatable amino-acids, defaulting to character "X". o There was a typo for the total number of printed bases in the ACNUC books: 474,439 should be 526,506. o Function invers() has been d...