Displaying 6 results from an estimated 6 matches for "ndup".
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2020 Mar 28
0
[klibc:update-dash] dash: eval: Use the correct expansion mode for fd redirection
...k>
---
usr/dash/eval.c | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/usr/dash/eval.c b/usr/dash/eval.c
index dc0c9fa2..4981f156 100644
--- a/usr/dash/eval.c
+++ b/usr/dash/eval.c
@@ -529,7 +529,7 @@ expredir(union node *n)
case NFROMFD:
case NTOFD:
if (redir->ndup.vname) {
- expandarg(redir->ndup.vname, &fn, EXP_FULL | EXP_TILDE);
+ expandarg(redir->ndup.vname, &fn, EXP_TILDE | EXP_REDIR);
fixredir(redir, fn.list->text, 1);
}
break;
2004 Nov 12
0
Design Matrix
...e1.spot) and the second slide(mice2.spot) are
dye-swap. There is no common reference. There are 3 replicated spots of
each gene on each array (384 genes in total).
MA is an object of class marrayNorm, below is what I did.
>design <- c(1,-1,1,-1,1)
>cor <- duplicateCorrelation(MA,design,ndups=3)
>cor$consensus.correlation
[1] 0.506
>fit <- lmFit(MA,design,ndups=3,correlation=cor$consensus.correlation)
>fit <- eBayes(fit)
>topTable(fit,n=20,adjust="fdr")
The result is,
ID M A t P.Value B
348 -1.3 10.8 -3.98 0.577 -4.47
371 -1.91 11.5 -3.36 0.577 -4.47
1...
2007 Aug 23
0
[git patch] klibc dash 0.5.4 update
...USH)) {
struct redirtab *q;
q = ckmalloc(sizeof (struct redirtab));
q->next = redirlist;
@@ -132,12 +132,11 @@ redirect(union node *redir, int flags)
}
n = redir;
do {
- fd = n->nfile.fd;
- if ((n->nfile.type == NTOFD || n->nfile.type == NFROMFD) &&
- n->ndup.dupfd == fd)
- continue; /* redirect from/to same file descriptor */
-
newfd = openredirect(n);
+ if (newfd < -1)
+ continue;
+
+ fd = n->nfile.fd;
if (sv) {
p = &sv->renamed[fd];
@@ -174,7 +173,7 @@ redirect(union node *redir, int flags)
if (memory[2])
out2 = &a...
2007 Jul 30
0
problems in limma
...0
[12,] -1 0 0
[13,] 0 -1 1
[14,] 0 -1 1
[15,] 0 -1 1
[16,] 0 -1 1
[17,] 0 -1 1
[18,] 0 -1 1
> i<-MA.p$genes$Status=="gene"
> corMA.pi<-duplicateCorrelation(MA.p[i,],design,ndups=2)
Warning messages:
1: Too much damping - convergence tolerance not achievable in:
glmgam.fit(dx, dy, start = start, tol = tol, maxit = maxit, trace = trace)
2: Too much damping - convergence tolerance not achievable in:
glmgam.fit(dx, dy, start = start, tol = tol, maxit = maxit, trace = trace)...
2007 Mar 02
0
LIMMA contrast.matrix
...ml16med.spot CD4 DN
ml17med 17 ml17med.spot DN CD4
> design <- modelMatrix(targets, ref="CD4")
Found unique target names:
CD4 CD8 DN
> design
CD8 DN
ml12med 1 0
ml13med -1 0
ml14med 1 -1
ml15med -1 1
ml16med 0 1
ml17med 0 -1
> fit <- lmFit(MA, design, ndups=2)
> contrast.matrix <-
cbind("CD8-CD4"=c(1,0),"DN-CD4"=c(0,1),"CD8-DN"=c(1,-1))
> rownames(contrast.matrix) <- colnames(design)
> contrast.matrix
CD8-CD4 DN-CD4 CD8-DN
CD8 1 0 1
DN 0 1 -1
******************************************************...
2010 May 04
2
sched provider
Hi All,
I used the following script from the dtrace manual to measure how long a particular process runs on the cpu. Modified it to look at the exact timestamps:
[i]
sched:::on-cpu
{
self->ts = timestamp;
printf("on=%d\n", self->ts)
}
sched:::off-cpu
/self->ts/
{
printf("off=%d\n", timestamp)
self->ts = 0;
}
[/i]
The output looks like this:
[i]on=24591
off=24603