search for: ncdf2

Dear All, I recently got a 64bit machine and had netcdf-3.6.2 installed. Then I tried to install ncdf package but got the following error message when using netcdflib: gcc -std=gnu99 -I/home/ljin/share/R-2.6.1/include -I/home/ljin/share/R-2.6.1/include -I. -I/usr/local/include -fpic -g -O2 -c ncdf2.c -o ncdf2.o gcc -std=gnu99 -I/home/ljin/share/R-2.6.1/include -I/home/ljin/share/R-2.6.1/include -I. -I/usr/local/include -fpic -g -O2 -c ncdf3.c -o ncdf3.o ncdf3.c: In function 'R_nc_get_vara_charvarid': ncdf3.c:221: warning: assignment discards qualifiers from pointer target type ncd...

...-fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -c ncdf.c -o ncdf.o gcc -m64 -std=gnu99 -I/usr/include/R -I/usr/local/include -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -c ncdf2.c -o ncdf2.o gcc -m64 -std=gnu99 -I/usr/include/R -I/usr/local/include -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -c ncdf3.c -o ncdf3.o gcc -m64 -std=gnu99 -shared -L/usr/local/lib64 -o nc...

....c: In function ‘R_nc_put_vara_double’: ncdf.c:582: warning: format ‘%d’ expects type ‘int’, but argument 3 has type ‘size_t’ ncdf.c:585: warning: format ‘%d’ expects type ‘int’, but argument 3 has type ‘size_t’ gcc -std=gnu99 -I/usr/share/R/include -I/apps/netcdf/4.0.1/gcc/include -fpic -g -O2 -c ncdf2.c -o ncdf2.o gcc -std=gnu99 -I/usr/share/R/include -I/apps/netcdf/4.0.1/gcc/include -fpic -g -O2 -c ncdf3.c -o ncdf3.o ncdf3.c: In function ‘R_nc_get_vara_charvarid’: ncdf3.c:221: warning: assignment discards qualifiers from pointer target type ncdf3.c: In function ‘R_nc_get_vara_numvarid’: ncdf3....

...: creating ./config.status config.status: creating R/load.R config.status: creating src/Makevars ** libs gcc -m64 -std=gnu99 -I/usr/include/R -I. -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -c ncdf2.c -o ncdf2.o gcc -m64 -std=gnu99 -I/usr/include/R -I. -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -c ncdf3.c -o ncdf3.o ncdf3.c: In function ?R_nc_get_vara_charvarid?: ncdf3.c:221: warning: as...

...brary file libnetcdf.a in directory /usr/local/netcdf-3.6.1/lib configure: creating ./config.status config.status: creating R/load.R config.status: creating src/Makevars ** libs gcc -std=gnu99 -I/usr/local/lib64/R/include -I/usr/local/netcdf-3.6.1/include -I/usr/local/include -fpic -g -O2 -c ncdf2.c -o ncdf2.o gcc -std=gnu99 -I/usr/local/lib64/R/include -I/usr/local/netcdf-3.6.1/include -I/usr/local/include -fpic -g -O2 -c ncdf3.c -o ncdf3.o ncdf3.c: In function 'R_nc_get_vara_charvarid': ncdf3.c:221: warning: assignment discards qualifiers from pointer target type ncdf3.c: In...

...p-buffer-size=4 -m64 -mtune=generic -c ncdf.c -o ncdf.o gcc -m64 -std=gnu99 -I/usr/include/R -DNDEBUG -I/usr/local/include -I/usr/local/include -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -c ncdf2.c -o ncdf2.o gcc -m64 -std=gnu99 -I/usr/include/R -DNDEBUG -I/usr/local/include -I/usr/local/include -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -c ncdf3.c -o ncdf3.o gcc -m64 -std=gnu99 -I/u...

...or nc_open in -lnetcdf... yes Found netcdf library file libnetcdf.a in directory . configure: creating ./config.status config.status: creating R/load.R config.status: creating src/Makevars ** libs gcc -std=gnu99 -I/usr/lib64/R/include -I/usr/lib64/R/include -I. -I/usr/local/include -fpic -g -O2 -c ncdf2.c -o ncdf2.o gcc -std=gnu99 -I/usr/lib64/R/include -I/usr/lib64/R/include -I. -I/usr/local/include -fpic -g -O2 -c ncdf3.c -o ncdf3.o ncdf3.c: In function ?R_nc_get_vara_charvarid?: ncdf3.c:221: warning: assignment discards qualifiers from pointer target type ncdf3.c: In function ?R_nc_get_vara_n...

....status: creating src/Makevars ** libs gcc -std=gnu99 -I/home/challar/R/R-2.11.1/include -I/home/challar/netcdf/include -I/usr/local/include -fpic -g -O2 -c ncdf.c -o ncdf.o gcc -std=gnu99 -I/home/challar/R/R-2.11.1/include -I/home/challar/netcdf/include -I/usr/local/include -fpic -g -O2 -c ncdf2.c -o ncdf2.o gcc -std=gnu99 -I/home/challar/R/R-2.11.1/include -I/home/challar/netcdf/include -I/usr/local/include -fpic -g -O2 -c ncdf3.c -o ncdf3.o gcc -std=gnu99 -shared -L/usr/local/lib64 -o ncdf.so ncdf.o ncdf2.o ncdf3.o -L/home/challar/netcdf/lib -lnetcdf installing to /home/challar/R/R-2...

...******************************************** ** libs Aviso: comando ejecutado 'make -f "Makevars.win" -f "C:/PROGRA~1/R/R-31~1.3/etc/x64/Makeconf" -f "C:/PROGRA~1/R/R-31~1.3/share/make/winshlib.mk" SHLIB="ncdf4.dll" WIN=64 TCLBIN=64 OBJECTS="ncdf.o ncdf2.o ncdf3.o src_ncdf4.o"' tiene estatus 127 ERROR: compilation failed for package 'ncdf4' * removing 'C:/Users/MRN/Documents/R/win-library/3.1/ncdf4' * restoring previous 'C:/Users/MRN/Documents/R/win-library/3.1/ncdf4' Warning in install.packages : running command ...