search for: namd

Before: /Users/echeng/LLVM/llvm/Release/bin/llvm-ld -L/Developer/usr/llvm- gcc-4.2/lib/gcc/i686-apple-darwin9.2.0/4.2.1 -L/Developer/usr/llvm- gcc-4.2/lib Output/444.namd.linked.bc -lc -lstdc++ -lm -o Output/ 444.namd.llvm llvm-ld: warning: Cannot find library 'stdc++' Now: /Users/echeng/LLVM/llvm/Release/bin/llvm-ld -L/Developer/usr/llvm- gcc-4.2/lib/gcc/i686-apple-darwin9.2.0/4.2.1 -L/Developer/usr/llvm- gcc-4.2/lib Output/444.namd.linked.bc -lc...

Hi Duncan I am facing a build error about __builtin_iceil when compiled with dragonegg using -ffast-math option. My dragonegg is built with gcc-4.7.0 (I am compiling namd spec benchmark here again). Any idea? g++ -march=bdver2 -save-temps -fplugin=/home/anboyapa/install/bin/dragonegg.so -O2 -march=bdver2 -save-temps -fplugin=/home/anboyapa/install/bin/dragonegg.so -mno-fma -mfma4 -ffast-math -DSPEC_CPU_LP64 Compute.o ComputeList.o ComputeNonbondedUtil.o...

...cribs looking at __builtin_iceil. Any idea how to resolve that as well? clang++ -O2 -march=bdver2 -mno-fma -save-temps -mfma4 -ffp-contract=fast -DSPEC_CPU_LP64 Compute.o ComputeList.o ComputeNonbondedUtil.o LJTable.o Molecule.o Patch.o PatchList.o ResultSet.o SimParameters.o erf.o spec_namd.o -o namd spec_namd.o: In function `main': spec_namd.ll:(.text+0x2a3): undefined reference to `__builtin_iceil' > Please open a bug report with a minimal test case > Will do. Thanks -Anitha > > > Ciao, Duncan. > > when compiled > &...

...error about __builtin_iceil it's surely just that dragonegg doesn't have any support for this builtin. Please open a bug report with a minimal test case. Ciao, Duncan. when compiled > with dragonegg using -ffast-math option. My dragonegg is built with gcc-4.7.0 > (I am compiling namd spec benchmark here again). > Any idea? > g++ -march=bdver2 -save-temps -fplugin=/home/anboyapa/install/bin/dragonegg.so > -O2 -march=bdver2 -save-temps -fplugin=/home/anboyapa/install/bin/dragonegg.so > -mno-fma -mfma4 -ffast-math -DSPEC_CPU_LP64 Compute.o ComputeList.o > Co...

...for iceil would solve both problems. Ciao, Duncan. > clang++ -O2 -march=bdver2 -mno-fma -save-temps -mfma4 -ffp-contract=fast > -DSPEC_CPU_LP64 Compute.o ComputeList.o ComputeNonbondedUtil.o LJTable.o > Molecule.o Patch.o PatchList.o ResultSet.o SimParameters.o erf.o > spec_namd.o -o namd > spec_namd.o: In function `main': > spec_namd.ll:(.text+0x2a3): undefined reference to `__builtin_iceil' > > Please open a bug report with a minimal test case > > Will do. Thanks > -Anitha > > Ciao, Duncan. > > wh...

..."response") contr.identity <- contr.treatment formals(contr.identity)$contrasts <- FALSE contrasts <- contrasts formals(contrasts)$contrasts <- FALSE if (length(data)) { contr.funs <- c('contr.identity', 'contr.poly') namD <- names(data) for (i in namD) if (is.character(data[[i]])) { data[[i]] <- factor(data[[i]]) warning(gettextf("variable '%s' converted to a factor", i), domain = NA) } isF <- sapply(data, function(x) is.facto...

...assembler. This fits into the analysis as well - dragonegg *might not* be using integrated assembler at all. Here is a log of my run that ended on happy note using -no-integrated-as. Thanks Craig :-) /local/home/anitha/cpu2006/bin/specinvoke -E -d /local/home/anitha/cpu2006/bench spec/CPU2006/444.namd/run/run_peak_ref_llvm.0001 -c 1 -e compare.err -o compare. stdout -f compare.cmd Success: 1x444.namd Producing Raw Reports mach: default ext: llvm size: ref set: int set: fp format: raw -> /local/home/anitha/cpu2006/result/CFP2006.102.ref.rsf Parsing flags for 444.namd...

Hi Anitha, > http://llvm.org/bugs/show_bug.cgi?id=14185 > I am stuck on analysis. Does any one have alternate suggestions on debugging > llvm? (Please refer to comments for the work done so far) try to reduce a small standalone testcase which is an LLVM IR (.ll) file. Ciao, Duncan.

Hi, http://llvm.org/bugs/show_bug.cgi?id=14185 I am stuck on analysis. Does any one have alternate suggestions on debugging llvm? (Please refer to comments for the work done so far) -- * Anitha* -------------- next part -------------- An HTML attachment was scrubbed... URL: <http://lists.llvm.org/pipermail/llvm-dev/attachments/20121105/3c6b8af3/attachment.html>

...-------+----------------------------------------------------------------------------------------------+ | mcf2000 | price_out_impl | +-----------------+----------------------------------------------------------------------------------------------+ | namd | _ZN20ComputeNonbondedUtil26calc_pair_energy_fullelectEP9nonbonded | +-----------------+----------------------------------------------------------------------------------------------+ | povray | _ZN3povL24All_Sphere_IntersectionsEPNS_13Object_StructEPNS_10...

Hello everyone, I am trying to fit the following model All X. variables are continuous, while the conditions are categoricals. model <- lm(X2

...c(2, 1, 2, 1, 1, 1, 2, : replacement has 100 rows, data has 50 > However, the call to lm works if the matrix is a numeric instead of logical: x <- rnorm(50) y <- matrix(runif(100),ncol=2) NROW(x)==NROW(y) lm(x~y) Seems to be a problem in model.matrix.default: debug: for (nn in namD[isF]) if (is.null(attr(data[[nn]], "contrasts"))) contrasts(data[[nn]]) <- contr.funs[1 + isOF[nn]] Browse[1]> Error in "[[<-.data.frame"(`*tmp*`, nn, value = c(1, 2, 2, 2, 2, 2, 2, : replacement has 100 rows, data has 50 > > R.Version() $platform [1...

...default for loop vectorizer because it should generally help performance. I've tested the performance impact on Intel sandybridge machine with speccpu benchmarks: Benchmark Base:Reference (1) ------------------------------------------------------- spec/2006/fp/C++/444.namd 26.84 -0.31% spec/2006/fp/C++/447.dealII 46.19 +0.89% spec/2006/fp/C++/450.soplex 42.92 -0.44% spec/2006/fp/C++/453.povray 38.57 -2.25% spec/2006/fp/C/433.milc 24.54 -0.76% spec/2006/fp/C/470.lbm 41....

...f | 42 95098 | 473.astar | 0 146301 | 462.libquantum | 5 428082 | 458.sjeng | 9773 808471 | 433.milc | 2163 1787190 | 450.soplex | 72 2472234 | 401.bzip2 | 229 2574217 | 456.hmmer | 1833 3492577 | 445.gobmk | 8480 3685838 | 444.namd | 616 12943554 | 471.omnetpp | 422 20068605 | 464.h264ref | 8593 23849576 | 400.perlbench | 99316 37779455 | 447.dealII | 11204 186008992 | 403.gcc | 404828 I am finding these results weird because I was expecting a larger number of no-alias response...

On 11 March 2013 10:06, Anitha B Gollamudi <anitha.boyapati at gmail.com> wrote: > On 23 January 2013 00:20, Craig Topper <craig.topper at gmail.com> wrote: >> >> Are you still having issues with FMA4? I wonder if PR15040 is related. A >> fix was just committed. Unfortunately r173176 does not fix this. I have updated the trunk and ran...Miscompare still persists.

...es... no, not found in /home/vadve/shared/b enchmarks/speccpu2000/benchspec checking for spec2006 benchmark sources... no, not found in /home/vadve/shared/b enchmarks/speccpu2006/benchspec checking for povray benchmark sources... no, not found in /home/vadve/shared/ben chmarks/povray31 checking for namd benchmark sources... no, not found in /home/vadve/shared/bench marks/spec_namd checking for sweep3d benchmark sources... no, not found in /home/vadve/shared/be nchmarks/sweep3d checking for fpgrowth benchmark sources... no, not found in /home/vadve/shared/b enchmarks/fpgrowth checking for alp bench...

...110 403.gcc -13,006 445.gobmk -1,716 464.h264ref -684 456.hmmer -391 462.libquantum -4 429.mcf -4 471.omnetpp -1,980 400.perlbench -4,176 458.sjeng -338 450.soplex -395 483.xalancbmk -4,183 447.dealII -186 433.milc -34 444.namd -104 453.povray -1,785 482.sphinx3 -112 I propose to factor out the relevant code from BranchFolding into a utility, and call it from BlockPlacement whenever the layout is changed. It is similar to D18226 and D18411 which factor tail duplication into a utility and call it f...

...---------------------------------------------------------+ > > | mcf2000 | price_out_impl > > | > > > +-----------------+----------------------------------------------------------------------------------------------+ > > | namd | > > _ZN20ComputeNonbondedUtil26calc_pair_energy_fullelectEP9nonbonded > > | > > > +-----------------+----------------------------------------------------------------------------------------------+ > > | povray | > > > _...

...----------------------------------------------------------------------------------+ > | mcf2000 | price_out_impl > | > +-----------------+----------------------------------------------------------------------------------------------+ > | namd | > _ZN20ComputeNonbondedUtil26calc_pair_energy_fullelectEP9nonbonded > | > +-----------------+----------------------------------------------------------------------------------------------+ > | povray | > _ZN3povL24All_Sphere_IntersectionsEP...

...; > - > > bzip2: 9.15% > - > > gcc: 4.03% > - > > sphinx3: 3.8% > - > > H264ref: 3.24% > - > > Perlbench: 3% > > LO: > > - > > bzip2: 7.27% > - > > sphinx3: 3.65% > - > > Namd: 3.08% > - > > Gcc: 3.06% > - > > H264ref: 3.05% > > MO: > > - > > Namd: 7.8% > - > > bzip2: 7.27% > - > > libquantum: 2.99% > - > > h264ref: 2% > > > Do you understand why so? > > I...