search for: mvabund

Dear All, This is my first post, and probably (and hence apologies that) my question is very silly! I'm having issues with a the mvabund package (http://cran.r-project.org/web/packages/mvabund/index.html), and would be great to get some help! Here is the code (and files are attached): library(mvabund) ##visualizing data florabund <- read.csv("CPL_floristics_abund_v1d.csv", header=TRUE) vegtype <- read.csv("CP...

Dear R users, I am trying to analyze multivariate abundance data using the mvabund package, but errors occur for several functions. I created a mvabund object named faunadat consisting of 8 dependent variables each containing 64 positive integer values (bact, fung, plant, omn, pred, orib, meso, spring). There are 4 factors: harv, rep, depth and lit. I then created a formula: &g...

...R under which package installation is being done. So the general form is to use ${R_HOME}/bin/R to select the right version. And since ${R_HOME} might contain spaces, you need something like "${R_HOME}/bin/R". There appear to be bare uses of Rscript in Rcpp RQuantLib bifactorial mvabund, of bare R in ROracle pgfSweave rcom and many more packages without quotes. (b) There are further issues with platforms which use sub-architectures (mainly Mac OS X and R-devel Windows). On Windows the architecture-dependent executables will (as from R 2.12.0) be in subdirectories of ${R_HOME...

...the volunteers' vacations, there will be minimal support for Windows' binary packages for the next month and in particular package updates may be delayed. Some packages still need updates (apart from those already updated on CRAN extras) for use on Windows with R-devel, notably lossDev mvabund phylobase RInside Rserve xlsReadWrite Brian Ripley -- Brian D. Ripley, ripley at stats.ox.ac.uk Professor of Applied Statistics, http://www.stats.ox.ac.uk/~ripley/ University of Oxford, Tel: +44 1865 272861 (self) 1 South Parks Road, +44 1865 27...

I'm in the process of converting some S3 methods to S4 methods. I have this function : setGeneric("enrichmentCalc", function(rs, organism, seqLen, ...){standardGeneric("enrichmentCalc")}) setMethod("enrichmentCalc", c("GenomeDataList", "BSgenome"), function(rs, organism, seqLen, ...) { ... ... ... })

...1.0), mixdist (0.5-3), mixlow (1.0.0), mixOmics (2.7-1), mixtools (0.4.4), mlegp (3.1.1), mlmmm (0.3-1.2), mlogit (0.1-7), mokken (2.3), monomvn (1.8-3), mrdrc (1.0-5), msm (0.9.7), mstate (0.2.4), mtsc (0.0.2), muhaz (1.2.5), multcomp (1.1-7), multinomRob (1.8-4), multtest (2.4.0), mutatr (0.1.2), mvabund (0.1-10), mvbutils (2.5.1), mvtnorm (0.9-92), nanop (1.0-1), ncdf (1.6.1), ncvreg (2.1), NetCluster (0.2), NetData (0.2), networksis (1.4), nFactors (2.3.2), nFDR (0.0-1), nleqslv (1.6.1), nltm (1.4.1), NMF (0.4.8), nnls (1.3), nodeHarvest (0.5), noia (0.94.1), norm (1.0-9.2), np (0.40-1), nsRFA (0...