search for: mutant

...have an experiment in which an output is measured in response to 42 different categories. I am only interested which of the categories is significantly different from a reference category. Here is the summary of the results: summary(simple.fit) Call: lm(formula = as.numeric(as.vector(TNFa)) ~ Mutant.ID, data = imputed.data) Residuals: Min 1Q Median 3Q Max -238.459 -25.261 -0.868 25.660 309.496 Coefficients: Estimate Std. Error t value Pr(>|t|) (Intercept) 49.0479 10.5971 4.628 5.08e-06 *** Mutant.IDB 149.8070 23.1632 6.467 3.09e-10...

...results already. And we would like to share them with you. But, let me give you a brief introduction first. ### Mutation Testing In a nutshell, Mutation Testing is a way to evaluate a quality of a test suite. The approach suggests introducing a slight change into the code under a test (so called mutant). Then, if the test fails, mutant is considered as killed. Otherwise we say that mutant has survived. Along with that Mutation Testing introduces a metric, called Mutation Score: mutation score = (killed mutants) / (total mutants) The higher the mutation score - the more adequate the test sui...

...riment variability is very high but where within an experiment, the data nearly always goes in the "right" (hypothesis confirming) direction. I am trying to figure out the right way to use R to do the statistics and generate an appropriate figure. To be specific, we have a virus and a mutant derivative, and the hypothesis is that the wild type virus is specifically suppressing active transcription in a manner that is abrogated in the mutant. The experiment is to measure the amount of viral chromatin associated with overall histone (should be the same between wild type and mutant),...

...riability is very high but where within an experiment, the data nearly always goes in the "right" (hypothesis confirming) direction. I am trying to figure out the right way to use R to do the statistical analysis and generate an appropriate figure. To be specific, we have a virus and a mutant derivative, and the hypothesis is that the wild type virus is specifically suppressing transcription activity in a manner that is abrogated in the mutant. The experiment is to measure the amount of viral chromatin associated with overall histone (should be the same between wild type and mutant)...

Hello All, Started out awhile ago trying to select columns in a dataframe whose names contain some variation of the word "mutant" using code like: names(KRASyn)[grep("muta", names(KRASyn))] The idea then would be to add together the various columns using code like: KRASyn$Mutant_comb <- rowSums(KRASyn[grep("muta", names(KRASyn))]) What I discovered though, is that this selects columns like &qu...

Version of R: Windows Version 2.0.0 The experimental design contains two plant lines - a control (C) and a mutant (M) - grown out three separate times in plots A, B, C. The design is unbalanced: In plot A, 9 control plants were grown with 29 mutant plants. In plot B, 8 control plants were grown with 20 mutant plants. In plot C, 8 control plants were grown with 22 mutant plants. The dependent variable,...

Hi, I have a data set like this: Mutant Rep Time OD 02H02 1 0 0.029 02H02 2 0 0.029 02H02 3 0 0.023 02H02 1 8 0.655 02H02 2 8 0.615 02H02 3 8 0.557 02H02 1 12 1.776 02H02 2 12 1.859 02H02 3 12 1.668 02H02 1 16 3.379 02H02 2 16 3.72...

...s soon! What a great way to listen to radio. Cheers, Jordan On 02/26/2012 12:01 AM, Paul Webster wrote: > The Grace and Logitech devices can play streaming OGG. I have different models of each and can test a specific stream for you to verify. > I haven't seen a definitive list for the Mutant device (doesn't seem to list them in the manual). > > Paul Webster > > On 26 Feb 2012, at 00:11, TheDarkener <thedarkener at logicalnetworking.net> wrote: > >> Hi all, >> >> I just discovered some really cool looking Wi-Fi radio devices that seem >>...

...o-called "simple" coding. #### Simple coding #### KRASpatient <- c("001-001", "001-002", "001-003", "001-004", "001-005", "001-006", "001-007") KRAStested <- c(2,3,2,2,2,3,3) KRASwild <- c(1,0,2,0,3,1,3) KRASmutant <- c(4,2,2,3,1,2,2) simpleData <- data.frame(KRASpatient, KRAStested, KRASwild, KRASmutant) simpleData Here, KRAStested is calculated by summing all references to "KRAS" for each patient. Wild is calculated by summing all references to "wild type", "wild", and...

Hello All, This will probably be easy for some but isn't for me. Currently am working on a text mining exercise. Want to be able to predict whether cancer patients got KRAS testing, and, if so, whether the test yielded a result of wild type/negative or mutant/positive. I've begun with a "bag-of-words approach" that looks at the count of specific terms in the medical records and then uses some of those as predictors. This works great for predicting whether or not patients got tested. It's not so good though when it comes to predicting...

...t week 6? For the effect of interaction, is it refer to both time and treatment refer, which is refer to M9? Besides that, I can not figure out the second example of design matrix, Mt for Weaver data set in LimmaGUI help file. Is the design matrix looking at the effect of different time point for mutant sample? Mt11 and Mt21 refer to the effect of mutant at day 11 and day 21 alone? What is the logically theory behind to asign 1 or -1 to slides P21WT.P11WT for effect of Mt11 and Mt21? Does it has anything to do with the vector? Or we will subtract it with Wt at both time point in order for us to lo...

Hello, In limmaGUI, after running a linear model for a single gene & time point (mutant vs control), the venn-diagram for differentially expressed genes with a p-value cut-off gives a different number than the top-table with the same cut-off (2600 vs. 791). I have seen the same thing happen before for multiple time points (when the venn-diagram is more relevant) Any ideas what is go...

...9;t possibly go right. First attempt at upgrading a 0.1.0 host trashed the networking config majorly. In defense of 0.1.1, I did have an odd networking config (since XCP had problems with the built in Broadcom ports, I pif-forgetted them and let Linux handle them. If it weren''t for the mutant network config, I bet 0.1.1 would have done ok. More seriously, 0.1.1 will not rejoin the pool because all the versions aren''t up to the same level (I seem to recall that this should work). Attempting the join with a --force wiped out the NICs under XCP and xe won''t work with...

Hello, I have a large (919 X 919), hierarchically clustered heatmap that I would like to read the labels off of. I have tried saving the figure in pdf format and enlarging it until I can see the labels, but if I make the labels small enough to read (so that they don't overlap) using cexRow and cexCol, they do not appear in the pdf. The limit seems to be anything below cexRow or Col = 0.06.

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Hey guys, I want to send an email via ROR and I have put this code at the very end in the config/environment.rb file- ActionMailer::Base.delivery_method = :smtp ActionMailer::Base.perform_deliveries = true ActionMailer::Base.logger = nil ActionMailer::Base.raise_delivery_errors = true ActionMailer::Base.smtp_settings = { :address => "[my smtp server]", :port => 25, :domain

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....rb:9: Finished in 0.00767 seconds 1 example, 1 failure ********************************************************************** *** Cow#moo loaded with 1 possible mutations ********************************************************************** 1 mutations remaining... No mutants survived. Cool! What''s going on? None of this is behaviour I expect. Ashley -- blog @ http://aviewfromafar.net/ linked-in @ http://www.linkedin.com/in/ashleymoran currently @ home

...17324 Lotus Notes Client 6.5.5 crashed 17731 Profesor Henry 5.0 doesn't run - a black screen appears 18572 TCP(iexplore.exe:23945): Application bug, race in MSG_PEEK. 18585 Evil Genius crashes with page fault in d3d9 18613 Hero Lab hangs with an invisible message box while loading Mutants & Masterminds RPG game 18632 gklayout.dll compiled from mingw fails to load (.dll from Firefox) 18997 Warcraft 3 1.23 crashes after remaining one minute in a Battle.net chat room. 19627 IPersistFile_fnGetCurFile too stubby, some installers fail 19798 IoReportResourceUsage is not im...

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