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me_lab
2010 May 20
1
computer out of memory when using sigpathway
...y <- data.frame(group,V2,V3,V4)
xx <- as.list(group)
xx <- xx[!is.na(xx)]
xx <- unlist(xx)
xxUnique <- unique(xx)
yy <- vector("list",length(xxUnique))
for(i in 1:length(yy))
{
MT <- "MT_lab"
yy[[i]] <- list(src=MT,title=xxUnique[i],probes=as.character(y[group==xxUnique[i],]$V4))
}
#the following code is for sigpathway analysis.
library(sigPathway)
YANG <- read.table("All microarray MT_LAB.txt",header=T,sep="\t")...