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2005 Jul 18
1
Nested ANOVA with a random nested factor (how to use the lme function?)
...om=~1|Site, data=mavric) > lme2 <- lme(sp~Location, random=~1|Location/Site, data=mavric) > anova(lme1) numDF denDF F-value p-value (Intercept) 1 40 3.418077 0.0719 Location 4 5 1.152505 0.4294 This gives me the correct F-value for Location from MSLocation/MSLocation:Transect, but the p-value doesn't seem to be correct (by my calculations in Microsoft Excel it should be 0.345) > anova(lme2) Warning in pf(q, df1, df2, lower.tail, log.p) : NaNs produced Warning: NAs introduced by coercion numDF denDF F-value p-valu...