Displaying 3 results from an estimated 3 matches for "mpiblast".
2007 Dec 13
1
MPI-Blast + Lustre
Anyone have any experience with MpiBlast and Lustre. We have
MpiBlast-1.4.0-pio and lustre-1.6.3 and we are seeing some pretty
poor performance with most of the mpiblast threads spending 20% to
50% of their time in disk wait. We have the genbank nt database
split into 24 fragments (one for each of our OSTs, 3 per OSS). T...
2008 Dec 11
2
5.0 vs 5.1 remote command execution
...sswords --with-zlib=/home/XXX/software/zlib-1.2.3 \
--with-tcp-wrappers
With everything else being identical and just swapping the sshd binaries,
I noticed the following:
# ssh -v host135
debug1: match: OpenSSH_5.0 pat OpenSSH*
...snip
# ssh host135 'echo $PATH'
/opt/octave/current:/opt/mpiblast/current/bin:/opt/lammps/current/bin:/opt/dlpoly/current/execute:
...snip
# ssh -v host135
debug1: match: OpenSSH_5.1 pat OpenSSH*
...snip
# ssh host135 'echo $PATH'
/usr/bin:/bin:/usr/sbin:/sbin
According to the docs, the behaviour exhibited by v5.1 is correct, remote
command execution...
2009 Jan 07
3
[Bug 1549] New: change in remote command execution behavior
...sswords
--with-zlib=/home/XXX/software/zlib-1.2.3 \
--with-tcp-wrappers
With everything else being identical and just swapping the sshd
binaries,
I noticed the following:
# ssh -v host135
debug1: match: OpenSSH_5.0 pat OpenSSH*
...snip
# ssh host135 'echo $PATH'
/opt/octave/current:/opt/mpiblast/current/bin:/opt/lammps/current/bin:/opt/dlpoly/current/execute:
...snip
# ssh -v host135
debug1: match: OpenSSH_5.1 pat OpenSSH*
...snip
# ssh host135 'echo $PATH'
/usr/bin:/bin:/usr/sbin:/sbin
According to the docs, the behavior exhibited by v5.1 is correct,
remote
command execution s...