search for: mpi_root

Has anybody tried to use Rmpi with the OpenMPI library instead of LAM/MPI? LAM appears to be somewhat hardcoded in the Rmpi setup. Before I start to experiment with changing this, has anybody else tried Rmpi with non-LAM MPI implementations? Dirk -- Hell, there are no rules here - we're trying to accomplish something. -- Thomas A. Edison

...echo "MPIRUN = @MPIRUN@" > $(USER_CONF)@echo "MPIEXEC = @MPIEXEC@" >> $(USER_CONF)@echo "ORTERUN = @ORTERUN@" >> $(USER_CONF)@echo "TMP_INC = @TMP_INC@" >> $(USER_CONF)@echo "TMP_LIB = @TMP_LIB@" >> $(USER_CONF)@echo "MPI_ROOT = @MPI_ROOT@" >> $(USER_CONF)@echo "MPITYPE = @MPITYPE@" >> $(USER_CONF)@echo "MPI_INCLUDE_PATH = @MPI_INCLUDE_PATH@" >> $(USER_CONF)@echo "MPI_LIBPATH = @MPI_LIBPATH@" >> $(USER_CONF)@echo "MPI_LIBS = @MPI_LIBS@" >> $(USER_...

Many thanks to Dr Yu for updating Rmpi for R 2.6.0, and for starting to make the changes to support Open MPI. I have just built the updated Debian package of Rmpi (i.e. r-cran-rmpi) under R 2.6.0 but I cannot convince myself yet whether it works or not. Simple tests work. E.g. on my Debian testing box, with Rmpi installed directly using Open Mpi 1.2.3-2 (from Debian) and using 'r' from

...ader file" ERROR: configuration failed for package ?Rmpi? So I tried: >install.packages("Rmpi",configure.args="--with-mpi=/usr/lib/openmpi") Trying to find mpi.h ... Cannot find mpi.h header file Please use --with-mpi=/path/to/mpi or specify the environment variable MPI_ROOT As well as: $sudo R CMD INSTALL Rmpi --configure-args=--with-mpi =/usr/lib64/openmpi but get same error message... So it looks it is asking me what I thought precisely that I was doing (specifying the library)... Should I do something more elaborate? I feel this was working before when I used...

...ssages: 1: In install.packages("snow", dependencies = T) : installation of package ‘rpvm’ had non-zero exit status 2: In install.packages("snow", dependencies = T) : installation of package ‘rsprng’ had non-zero exit status > I have installed openmpi and tried to set the MPI_ROOT, but I'm not sure I picked the right path. christoph@dell-desktop:~$ whereis openmpi openmpi: /etc/openmpi /usr/lib/openmpi /usr/lib64/openmpi /usr/share/openmpi For now I set it to christoph@dell-desktop:~$ $MPI_ROOT bash: /etc/openmpi: is a directory I tried all of them but without any lu...

...intel-13.1.1/lib64 checking for openpty in -lutil... yes checking for main in -lpthread... yes ******************* Results of pbdMPI package configure ***************** >> TMP_INC = /opt/openmpi/1.6.4-1/intel-13.1.1/include >> TMP_LIB = /opt/openmpi/1.6.4-1/intel-13.1.1/lib64 >> MPI_ROOT = >> MPITYPE = OPENMPI >> MPI_INCLUDE_PATH = /opt/openmpi/1.6.4-1/intel-13.1.1/include >> MPI_LIBPATH = /opt/openmpi/1.6.4-1/intel-13.1.1/lib64 >> MPI_LIBS = -lutil -lpthread >> MPI_DEFS = -DMPI2 >> MPI_INCL2 = >> PKG_CPPFLAGS = -I/opt/openmpi/1.6.4-1/inte...

...R CMD INSTALL Rmpi_0.5-7.tar.gz --configure-args=--with-mpi=/usr/lib64/openmpi/1.3.1-gcc R CMD INSTALL Rmpi_0.5-7.tar.gz --configure-args=--with-mpi=/usr/lib64/openmpi/ #All of these attempt lead to error cannot find mpi head file and tell me to use "with-mpi=path/to/mpi" or specify the MPI_ROOT which I clearly cant find #I have also tried this in R using R install.packages("Rmpi") #but it gives the same error. sessionInfo() R version 2.9.0 (2009-04-17) x86_64-unknown-linux-gnu locale: LC_CTYPE=en_US.UTF-8;LC_NUMERIC=C;LC_TIME=en_US.UTF-8;LC_COLLATE=en_US.UTF-8;LC_MONETARY=C;...