search for: mother's

Dear R users, I am trying to fit a GLMM using lmer to a dataset where the brood identity (LNRREIR) is nested within mothers identity. The reason for this is that each mother can have several nests within each year and also between years. I am running the following script (actually I have tried all different combinations with LNRREIR and mother): mod <- lmer(sr~z.hatchday + (1|LNRREIR:mother) + (1|mother), f...

...ading through some manuals, but I cannot find my answer. I have a file containing many data: Vpn Code Family Age F1 F2 ... F17 1 1 M 46 1 2 ... 1 2 1 D 18 3 2 ... 4 3 2 M 50 3 3 ... 3 ... and so on. Now I can read it by: F = read.table("file", header=T) but now I want to seperate the mothers (M) and daugthers (D) of the family with all the data in all other fields. How can I do that? The 'Code' Tells me which mother belongs to which dougther. I want to make a matrix where I have the mothers on one and the daugthers on the other axis and compair the distance of every q...

Dear colleagues, there is a behaviour with S4 (virtual) classes that I find very hard to understand: Depending on the position of setAs(), the tree of inheritance changes. This is my baseline example that defines the classes "grandma", "mother", "daughter" and a virtual class "mr_x". For a new instance if "daughter", "mr_x" is betweeen "mother" and "grandma". setClass("grandma", slots = c(a = "character")) setClass("mother", slots = c(b = &quo...

Hello, I'm actually trying to fit a gee model with 2 nesting levels since I expect a correlation between all members of a litter at a first level and between all individuals sharing a mother at a second superior level with an exchangeable matrix. I order my dataframe by both mother and litter I try several syntaxes: id= mother*litter which give the same correlation matrix as id= litter*mother and id=litter with a matrix size of 7*7 which correspond to the maximum number of young per...

...1996, 1997, 1998) # the year when the bird reproduced the first time (for simplicity in the dummy data, all birds reproduce the year after it was born) year.1st.reprod <- year.hatch + 1 # some status (0/1) of an individual status <- c(1, 1, 1, 0, 0, 0, 1, 1, 1, 0, 0, 0, 1) # the id of the mother id.mother <- c(NA, NA, NA, NA, NA, NA, 1, 1, 1, 2, 2, 3, 3) # Status of the mother (0/1) status.mother <- c(NA, NA, NA, NA, NA, NA, 1, 1, 1, 0, 0, 1, 1) # a measure of individual measure <- rnorm(13) test.data <- data.frame(id, year, year.hatch, year.1st.reprod, status, id.mother, s...

...appended to as needed, and so the order that a class extends others isd refined by the order that those connections are defined. We can see this with two setClassUnion calls, rather than required setAs: > setClass("grandma", slots = c(a = "character")) > setClass("mother", slots = c(b = "matrix"), contains = "grandma") > setClass("daughter", slots = c(c = "list"), contains = "mother") > setClassUnion(name = "mr_x", members = c("daughter", "mother")) > setClassUnion(name...

...I am total Linux noob and have been doing ok up to now - any advice greatfully received. cheers, Dan PS at the bottom of this it seems to not find 'C:\windows\gecko\0.9.1\wine_gecko\sqlite3.d' - but the file is there on WINE's C drive the terminal output is this: ================= mother at Mothership:~$ sh winetricks Setting Windows version to win2k Executing wine regedit /home/mother/.wine/drive_c/winetrickstmp/set-winver.reg Executing wine /home/mother/.winetrickscache/directx_nov2008_redist.exe /t:c:\winetrickstmp fixme:advapi:DecryptFileA "c:\\winetrickstmp\\" 000000...

...lity is to produce a warning when you use drop1 with the scope argument to get main effects in the presence of an interaction (even not signifikant) with "treatment" contrast. An example: library(MASS) ##- Data "genotype" names(genotype) ##- > [1] "Litter" "Mother" "Wt" ##- to be sure the contrasts are "treatment" options(contrasts = c("contr.treatment", "contr.poly" )) ##- model with interaction gen.int <- aov(Wt ~ Litter*Mother, data = genotype) drop1(gen.int, scope = .~., test = "F") ##- Model: #...

Hi all, I wonder if anyone can help, I have a dataframe with columns for... 'I.D' 'age' 'mothers I.D' 01 5 03 02 6 06 03 16 NA 04 8 06 05 3 NA 06 17 NA I need to create a new column for 'mothers age' which puts the age of the individual with 'mothers i.d' into the row for her offspring (so individual 01 would have 16...

Dear all I have a data.frame like that : father mother num_daughter daughter 291 3906 0 NULL 275 4219 0 NULL 273 4236 1 49410 281 4163 1 49408 274 4226 1 49406 295 3869 2 49403 49404 287 4113 0 NULL 295 3871 1 49401 292 3895 4 49396 49397 49398 49399 291 3900 3 49392 How to read it into R and transform it li...

...ndividual to qualify for my analysis I want both of the following two criteria to be fulfilled: First, I want to select measurement taken at a certain age: for the focal individual the year of measurement (year) should be the same as year.hatch Second, I want the focal individual to be born by a mother that reproduces for the first time. So the /parents /of the focal individual should have year == year.1st.reprod. The problem for me, I think, is that in my data set with several generations, an individual can be both offspring and parent to other offspring at the same time (e.g. id=3 in test....

Dear R users, I have a matrix with 2 columns with the variables: "daughter index", "mother index". I would like to draw a network digraph using this data, where each daughter is connected to a mother and between the connections inlcude a circle with the information on the indices ("daughter index", "mother index"): i.e. something similar to graphs produced by...

Hi R-people: I need a function to compute the number of months between 2 dates, in the same way a mother would do it. For example, if a kid is born on February 6, the number of months between that date and March 7 is exactly 1 month, although it is only 29 days. Thank you! Phil Smith CDC [[alternative HTML version deleted]]

Hi, I need help writing a function I capture seal pups mutliple times during the lactation season in order to monitor their growth rate. When I release them, the recovery (mother-pup) time is not the same for all individuals. I want to know if individuals that recover their mother the fastest are the ones with the highest growth rates. So, I noted at every release if the pup reovered his mother before we leave (yes or no). My dataframe looks like this Captu...

Hi all, I was wondering whether anyone could guide me to docu and code examples how to create and use a has_and_belongs_to_many relationship with a joining table where TWO columns are used to identify the relation to TWO alternative tables. Example: table 1: mothers [mother_id, name] table 2: fathers [father_id, name] table 3: children [child_id, name] joining table 4: children_parent [child_id, parent_id, parent_type] ''parent type'' can be either ''mother'' or ''father'', and depending on this, the '&...

&nbsp; Hi, List ,I am searching any package on R which can do wavelet filtering for mother wavelet morlet ,is anybody having any script for the same ? I am new to the RwAVELET ANALSSIS.. THANKS IN ADVANCE ANIL KUMAR ANIL KUMAR(&nbsp;METEOROLOGIST) LRF SECTION&nbsp; NATIONAL CLIMATE&nbsp;CENTER ADGM(RESEARCH) INDIA METEOROLOGICAL&nbsp;DEPARTMEN...

...ks ago I started to use the R C API for package development. Without knowing much about C, I've been able to write some routines sucessfully... until now. My problem consists in dynamically creating a list ("L1") of lists using .Call, the tricky part is that each element of the "mother list" contains two vectors (INTSXP and REALEXP types) with varying sizes; sizes that I set while I'm looping over another list's ("L1") elements (input list). The steps I've follow are: FIRST: Create the "mother list" of size "n=length(L0)" (doesn...

Hola a todos, A partir de los siguientes datos: d <- list(`1` = structure(list(ped = c(1L, 1L, 1L, 1L, 1L, 1L, 1L), id = 1:7, father = c(2L, 0L, 0L, 2L, 2L, 2L, 2L), mother = c(3L, 0L, 0L, 3L, 3L, 3L, 3L), sex = c(2L, 1L, 2L, 2L, 2L, 1L, 2L), affected = c(1L, 2L, 1L, 1L, 2L, 2L, 2L)), row.names = c("1", "2", "3", "4", "5", "6", "7"), class = "data.frame"), `2` = structure(list(...

All, I have: sales <- c(2300,900,155,102,42,10) names(sales) <- c("Christmas","Valentine's Day", "Mother's Day","Father's Day", "Thanksgiving","New Year's Day") barplot(sales,ylim=c(0,2500)) But it doesn't place all of the name labels on the plot. So I tried: sales <- c(2300,900,155,102,42,10) names(sales) <- c("Christmas"...

I have a data frame containing children, with variables 'year' = birth year, and 'm.id' = mother's id number. Let's assume that all the births of each mother is represented in the data frame. Now I want to create a subset of this data frame containing all children, whose mother's first birth was in the year 1816 or later. This seems to work: mid <- tapply(dat$year, dat$m...