search for: molewaterplein

...idea why i cant use merge() in the normal way here? I'm forced to add the column using: temp.b <- cbind(x, y[match(rownames(x), rownames(y)),17]) All insights appreciated for this leaRner, cheers, Karl -- Karl Brand <k.brand at erasmusmc.nl> Department of Genetics Erasmus MC Dr Molewaterplein 50 3015 GE Rotterdam P +31 (0)10 704 3211 | F +31 (0)10 704 4743 | M +31 (0)642 777 268

...print specific text strings at specified locations within the circles? and unions? -specify circle colors? -specify label font, size & color? All thoughts and response's greatly appreciated, cheers, Karl -- Karl Brand <k.brand at erasmusmc.nl> Department of Genetics Erasmus MC Dr Molewaterplein 50 3015 GE Rotterdam P +31 (0)10 704 3409 | F +31 (0)10 704 4743 | M +31 (0)642 777 268

...y"), breaks = c(0, 0.01, 0.05, 0.075, 0.1, 1), trace = "none", dendrogram = "none", density.info = "none", margins=c(12, 8)) -- Karl Brand <k.brand at erasmusmc.nl> Department of Genetics Erasmus MC Dr Molewaterplein 50 3015 GE Rotterdam P +31 (0)10 704 3409 | F +31 (0)10 704 4743 | M +31 (0)642 777 268

...images/unknown_pleasures.jpg I have some experience using the rgl package to create 3D PCA plots, but have no idea where to start for an image like this. I'd really appreciate suggestions & help on how might achieve this using R, Karl -- Karl Brand Department of Genetics Erasmus MC Dr Molewaterplein 50 3015 GE Rotterdam T +31 (0)10 704 3457 |F +31 (0)10 704 4743 |M +31 (0)642 777 268

...number of 'white' or 'special' balls DRAWN a <- choose(m,k) b <- choose((N-m),(n-k)) z <- choose(N,n) prK <- (a*b)/z #'the answer' print(prK) [1] NaN > a [1] 7.985852e+65 > b [1] Inf > z [1] Inf -- Karl Brand Department of Genetics Erasmus MC Dr Molewaterplein 50 3015 GE Rotterdam T +31 (0)10 704 3457 | F +31 (0)10 704 4743 | M +31 (0)642 777 268

...pathway = c("pw.A", "pw.B", "pw.C"), cond.one = c(0.5, 0.4, NA), cond.two = c(0.6, 0.9, 0.2), cond.three = c(NA, 0.1, NA)) wanted.df -- Karl Brand Dept of Cardiology and Dept of Bioinformatics Erasmus MC Dr Molewaterplein 50 3015 GE Rotterdam T +31 (0)10 703 2460 |M +31 (0)642 777 268 |F +31 (0)10 704 4161

..._AU.UTF-8 [7] LC_PAPER=C LC_NAME=C [9] LC_ADDRESS=C LC_TELEPHONE=C [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C attached base packages: [1] stats graphics grDevices utils datasets methods base -- Karl Brand Department of Genetics Erasmus MC Dr Molewaterplein 50 3015 GE Rotterdam T +31 (0)10 704 3455 |F +31 (0)10 704 4743 |M +31 (0)642 777 268

...s as good as its purported to be. So maybe my motivation is nonsensical to expereinced ESS/R users. If so i'd really appreciate tips on efficient package installation/maintenance using Emacs/ESS. TIA, karl -- Karl Brand <k.brand at erasmusmc.nl> Department of Genetics Erasmus MC Dr Molewaterplein 50 3015 GE Rotterdam P +31 (0)10 704 3455 | F +31 (0)10 704 4743 | M +31 (0)642 777 268

...able B") #Graph 5: plot(rnorm(20), rnorm(20), xlab = "Results 3 (Int)", ylab = "Variable C") #Graph 6: plot(rnorm(20), rnorm(20), xlab = "Results 3 (Int)", ylab = "Variable C") -- Karl Brand Department of Genetics Erasmus MC Dr Molewaterplein 50 3015 GE Rotterdam T +31 (0)10 704 3457 |F +31 (0)10 704 4743 |M +31 (0)642 777 268

...dfR<-cbind(dfR,2^(RGN$R)) suddenly, creates values to inf. Is the syntax changed for the ^ symbol in the latest R downloadable version? Kind regards, wilfred -- Dr. Ir. Wilfred Van IJcken Labmanager Genomics Erasmus Center for Biomics, Erasmus MC P.O. Box 1738, 3000 DR Rotterdam Dr. Molewaterplein 50, 3015 GE Rotterdam The Netherlands Tel +31 (0) 10 40 88 454 Fax +31 (0) 10 40 89 468 www.erasmusmc.nl/biomics <http://www.erasmusmc.nl/biomics>

...;afile.RData") Both failed. #** And while i've got your attention- is there a 'letter equivalent' to seq() which would have worked nicely for prfxs? ie., letter.seq(A:F) Thoughts and suggestions sincerely appreciated, Karl -- Karl Brand Department of Genetics Erasmus MC Dr Molewaterplein 50 3015 GE Rotterdam T +31 (0)10 704 3457 |F +31 (0)10 704 4743 |M +31 (0)642 777 268

..._2.35-7 loaded via a namespace (and not attached): [1] affyio_1.14.0 cluster_1.12.1 grid_2.10.1 [4] gtools_2.6.1 lattice_0.17-26 preprocessCore_1.8.0 [7] svMisc_0.9-56 tools_2.10.1 -- Karl Brand <k.brand at erasmusmc.nl> Department of Genetics Erasmus MC Dr Molewaterplein 50 3015 GE Rotterdam P +31 (0)10 704 3409 | F +31 (0)10 704 4743 | M +31 (0)642 777 268

...ti-clock-wise from horizontal. How to bring them back to horizontal? Or better, rotate 45deg clock-wise from horizontal (ie., rotate 135deg a.clock.wise from default)? Any suggestions or pointers to helpful resources greatly appreciated, Karl -- Karl Brand Department of Genetics Erasmus MC Dr Molewaterplein 50 3015 GE Rotterdam T +31 (0)10 704 3457 |F +31 (0)10 704 4743 |M +31 (0)642 777 268

...t;=3, "A&C"=0.5, "A&B&C"=0.1)) class(ve) [1] "VennDiagram" ve$colors <- c("red", "green", "blue") plot(ve) Error in col * 360 : non-numeric argument to binary operator -- Karl Brand Department of Genetics Erasmus MC Dr Molewaterplein 50 3015 GE Rotterdam T +31 (0)10 704 3457 |F +31 (0)10 704 4743 |M +31 (0)642 777 268

...orizontal? Or better, rotate 45deg clock-wise > from horizontal (ie., rotate 135deg a.clock.wise from default)? > > Any suggestions or pointers to helpful resources greatly appreciated, > > Karl > -- Karl Brand <k.brand at erasmusmc.nl> Department of Genetics Erasmus MC Dr Molewaterplein 50 3015 GE Rotterdam P +31 (0)10 704 3455 | F +31 (0)10 704 4743 | M +31 (0)642 777 268

How to remove all R objects in the RAM except for a few specified ones? rm(list=ls()) removes all R objects in the R work space. Another question is that whether removing all R objects actually releases the RAM? Thanks. -- View this message in context: http://r.789695.n4.nabble.com/How-to-remove-all-objects-except-a-few-specified-objects-tp2335651p2335651.html Sent from the R help mailing list

I was wondering if anyone could help me figure out how to make a Venn diagram in R where the circles are scaled to the size of each dataset. I have looked at the information for venn (in gplots) and vennDiagram (in limma) and I cannot seem to figure out what parameter to change. I have looked this up online and do not seem to be seeing anyone else who has posted this question or the answer to it

...ically, the contrasts i can NOT work out are: t1.S.CvsAll.Times & t1.L.CvsAll.Times ie., similar to t1.S.RvsAll.Times & t1.S.RvsAll.Times above but for the "C" tissue, not the "S". -- Karl Brand <k.brand at erasmusmc.nl> Department of Genetics Erasmus MC Dr Molewaterplein 50 3015 GE Rotterdam P +31 (0)10 704 3409 | F +31 (0)10 704 4743 | M +31 (0)642 777 268

...else statement needed for each column to make filtering on it optional? etc.... Any one with the patience to show their working version of such a funciton would receive my undying Rdulation. With thanks in advance, Karl -- Karl Brand Dept of Cardiology and Dept of Bioinformatics Erasmus MC Dr Molewaterplein 50 3015 GE Rotterdam T +31 (0)10 703 2460 |M +31 (0)642 777 268 |F +31 (0)10 704 4161

arima1 = arima(data.ts[1:200], order = c(1,1,1)) arima2 = arima(data.ts[5:205], order = c(1,1,1)) arima3 = arima(data.ts[10:210], order = c(1,1,1)) arima4 = arima(data.ts[15:215], order = c(1,1,1)) arima5 = arima(data.ts[20:220], order = c(1,1,1)) arima6 = arima(data.ts[25:225], order = c(1,1,1)) arima7 = arima(data.ts[30:230], order = c(1,1,1)) arima8 = arima(data.ts[35:235], order = c(1,1,1))