Displaying 12 results from an estimated 12 matches for "mklvars".
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2015 Sep 30
1
Build R with MKL and ICC
...nd paste if they find this thread in the future?
Here it is. The script is writen for Parallel studio 2016. Change path
accordingly if composerxe 2015.
libRlib and libRblas are build as shared librairies. It build with
static libraries too.
More options can be added to configure.
Best is to source mklvars and compilervars in a script so it won't
polluated your shell environment once the build is done.
---------------------------------------------------------------
#! /bin/sh
source /opt/intel/compilers_and_libraries_2016.0.109/linux/mkl/bin/mklvars.sh
intel64
source /opt/intel/bin/compilervars...
2017 Apr 20
2
Intel MKL compiling issue
...FLAGS=-fPIC -I/genetics/data/software/include --enable-R-shlib
I have used,
export MKL_NUM_THREADS=15
export MKLROOT=/genetics/data/software/intel/composer_xe_2013.4.183/mkl
export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:$MKLROOT/lib/intel64
/genetics/data/software/intel/composer_xe_2013.4.183/mkl/bin/mklvars.sh intel64
CPPFLAGS="-I/genetics/data/software/include -L/genetics/data/software/lib" \
./configure --prefix=/genetics/data/software --enable-R-shlib --enable-threads=posix --with-lapack \
--with-blas="-fopenmp -m64 -I$MKLROOT/include -L$MKLROOT/lib/intel64 -lmkl_gf_lp64 -lmkl_gnu_t...
2015 Sep 04
2
Build R with MKL and ICC
...Intel Model name:
> > Intel(R) Core(TM) i7-2600K CPU @ 3.40GHz - Sandybridge
> > R-3.2.2
> >
> > Here is my build configuration:
> >
> > -------------------------------------------------------
> > source /opt/intel/compilers_and_libraries_2016/linux/mkl/bin/mklvars.sh intel64
> > source /opt/intel/bin/compilervars.sh intel64
> > _mkllibpath=$MKLROOT/lib/intel64
> > _icclibpath=$MKLROOT/linux/compiler/lib
> > export LD_LIBRARY_PATH=${_mkllibpath}:${_icclibpath}
> > export MKL="-L${_mkllibpath} -L${_icclibpath} -lmkl_intel_lp6...
2015 Sep 02
4
Build R with MKL and ICC
...studio_xe_2016
Hardware : 8 Thread(s) per core: 2 Vendor ID: GenuineIntel Model name:
Intel(R) Core(TM) i7-2600K CPU @ 3.40GHz - Sandybridge
R-3.2.2
Here is my build configuration:
-------------------------------------------------------
source /opt/intel/compilers_and_libraries_2016/linux/mkl/bin/mklvars.sh intel64
source /opt/intel/bin/compilervars.sh intel64
_mkllibpath=$MKLROOT/lib/intel64
_icclibpath=$MKLROOT/linux/compiler/lib
export LD_LIBRARY_PATH=${_mkllibpath}:${_icclibpath}
export MKL="-L${_mkllibpath} -L${_icclibpath} -lmkl_intel_lp64
-lmkl_intel_thread -lmkl_core -liomp5 -lpthread...
2015 Sep 29
2
Build R with MKL and ICC
On Wed, Sep 9, 2015 at 11:26 PM, Nathan Kurz <nate at verse.com> wrote:
>
> As a short and simple approach, I just compiled the current R release
> on Ubuntu with ICC and MKL using just this:
>
> $ tar -xzf R-3.2.2.tar.gz
> $ cd R-3.2.2
> $ CC=icc CXX=icpc AR=xiar LD=xild CFLAGS="-g -O3 -xHost" CXXFLAGS="-g
> -O3 -xHost" ./configure
2017 Apr 20
0
Intel MKL compiling issue
...lude --enable-R-shlib
>
>
> I have used,
>
>
> export MKL_NUM_THREADS=15
> export MKLROOT=/genetics/data/software/intel/composer_xe_2013.4.183/mkl
> export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:$MKLROOT/lib/intel64
> /genetics/data/software/intel/composer_xe_2013.4.183/mkl/bin/mklvars.sh intel64
> CPPFLAGS="-I/genetics/data/software/include -L/genetics/data/software/lib" \
> ./configure --prefix=/genetics/data/software --enable-R-shlib --enable-threads=posix --with-lapack \
> --with-blas="-fopenmp -m64 -I$MKLROOT/include -L$MKLROOT/lib/intel64 -lmkl_gf_l...
2015 Sep 02
0
Build R with MKL and ICC
...d(s) per core: 2 Vendor ID: GenuineIntel Model name:
> Intel(R) Core(TM) i7-2600K CPU @ 3.40GHz - Sandybridge
> R-3.2.2
>
> Here is my build configuration:
>
> -------------------------------------------------------
> source /opt/intel/compilers_and_libraries_2016/linux/mkl/bin/mklvars.sh intel64
> source /opt/intel/bin/compilervars.sh intel64
> _mkllibpath=$MKLROOT/lib/intel64
> _icclibpath=$MKLROOT/linux/compiler/lib
> export LD_LIBRARY_PATH=${_mkllibpath}:${_icclibpath}
> export MKL="-L${_mkllibpath} -L${_icclibpath} -lmkl_intel_lp64
> -lmkl_intel_thread...
2015 Sep 05
0
Build R with MKL and ICC
...gt; Intel(R) Core(TM) i7-2600K CPU @ 3.40GHz - Sandybridge
>> > R-3.2.2
>> >
>> > Here is my build configuration:
>> >
>> > -------------------------------------------------------
>> > source /opt/intel/compilers_and_libraries_2016/linux/mkl/bin/mklvars.sh intel64
>> > source /opt/intel/bin/compilervars.sh intel64
>> > _mkllibpath=$MKLROOT/lib/intel64
>> > _icclibpath=$MKLROOT/linux/compiler/lib
>> > export LD_LIBRARY_PATH=${_mkllibpath}:${_icclibpath}
>> > export MKL="-L${_mkllibpath} -L${_icclibp...
2017 Apr 20
1
Intel MKL compiling issue
...lude --enable-R-shlib
>
>
> I have used,
>
>
> export MKL_NUM_THREADS=15
> export MKLROOT=/genetics/data/software/intel/composer_xe_2013.4.183/mkl
> export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:$MKLROOT/lib/intel64
> /genetics/data/software/intel/composer_xe_2013.4.183/mkl/bin/mklvars.sh intel64
> CPPFLAGS="-I/genetics/data/software/include -L/genetics/data/software/lib" \
> ./configure --prefix=/genetics/data/software --enable-R-shlib --enable-threads=posix --with-lapack \
> --with-blas="-fopenmp -m64 -I$MKLROOT/include -L$MKLROOT/lib/intel64 -lmkl_gf_l...
2013 Jul 20
7
Failure to Launch (was override -q option)
Attached is the very verbose ssh output. Just to be perverse, this time two
nodes lost connectivity. The only thing I see is lines saying that the two
connections are lost, although being honest I have no idea what everything
else means. For reference, 8 ssh cinnections were being made at the same
time for a 8x8mpi task.
N.B., since the OS I am using does not have rsh, I am currently using the
2015 Sep 07
2
Build R with MKL and ICC
...CPU @ 3.40GHz - Sandybridge
> >> > R-3.2.2
> >> >
> >> > Here is my build configuration:
> >> >
> >> > -------------------------------------------------------
> >> > source /opt/intel/compilers_and_libraries_2016/linux/mkl/bin/mklvars.sh intel64
> >> > source /opt/intel/bin/compilervars.sh intel64
> >> > _mkllibpath=$MKLROOT/lib/intel64
> >> > _icclibpath=$MKLROOT/linux/compiler/lib
> >> > export LD_LIBRARY_PATH=${_mkllibpath}:${_icclibpath}
> >> > export MKL="-L${...
2017 Apr 19
2
Default R-3.4.0 RC CXXFLAGS without -O2 on x86_64-linux-gnu with g++-5.4.0 causes WARNING from stl_list.h
Hi r-devel,
a recent install of R-3.4.0 RC (2017-04-13 r72510)?
on Linux (Ubuntu 16.04.1 LTS) x86_64-linux-gnu?
with?g++ (Ubuntu 5.4.0-6ubuntu1~16.04.4) 5.4.0 20160609
(see?http://bioconductor.org/checkResults/devel/bioc-LATEST/malbec2-NodeInfo.html?for more)?
results in CXXFLAGS not containing "-O2" as optimisation flag,
there is only " -Wall", while?CFLAGS are happy with