search for: misinherits

I am about one step away from heaven on earth. I think only one step! I am using dgc.genetics to run a TDT test on thousands of genetic loci. I have learnt (through the help of others on this mailing list) to send the complex output to useful data frames which in turn allow me to look at the big picture and screen the thousands of loci. Resultdt<-lapply(PGWide[,240:290], tdt) the above

This ought to work: resultdt <- lapply(PGWide[, 240:389], function(x, ...) try(tdt(x, ...))) You can then check the class of each component to see which one failed. Andy From: Farrel Buchinsky > > "Berton Gunter" <gunter.berton at gene.com> wrote in message > news:008601c67097$de1b46e0$5bc4fea9 at gne.windows.gene.com... > > ?try > > > > as in

...info", value, entry) Apply this "fix" would result in snpMatrix's "R CMD check" churning out: --------------------- .ld.withmany: local variable ?names.components? assigned but may not be used .ld.withmany: local variable ?nsnps.for.each? assigned but may not be used misinherits: local variable ?nc.snps? assigned but may not be used misinherits: local variable ?nr.snps? assigned but may not be used qq.chisq: local variable ?lab? assigned but may not be used read.HapMap.data: local variable ?base? assigned but may not be used read.HapMap.data: local variable ?build? assigne...