search for: misinheritances

...is a locus whose data trips up the tdt function. And when it does, it short circuits the entire loop. Nothing gets written to Resultdt. > Resultdt<-lapply(PGWide[,240:389], tdt) Error in rep.default(1, nrow(U)) : rep() incorrect type for second argument In addition: Warning messages: 1: 1 misinheritances in: phase.resolve(g.cs, g.mr, g.fr, as.allele.pair = TRUE, allow.ambiguous = (parent == 2: 1 misinheritances in: phase.resolve(g.cs, g.mr, g.fr, as.allele.pair = TRUE, allow.ambiguous = (parent == 3: 4 misinheritances in: phase.resolve(g.cs, g.mr, g.fr, as.allele.pair = TRUE, allow.ambiguous = (...

...("messed up") else > > print("works") > [1] "works" > [1] "works" > [1] "works" > [1] "works" > Error in rep.default(1, nrow(U)) : rep() incorrect type for > second argument In addition: Warning messages: > 1: 1 misinheritances in: phase.resolve(g.cs, g.mr, g.fr, > as.allele.pair = TRUE, allow.ambiguous = (parent == > 2: 2 misinheritances in: phase.resolve(g.cs, g.mr, g.fr, > as.allele.pair = TRUE, allow.ambiguous = (parent == > 3: 2 misinheritances in: phase.resolve(g.cs, g.mr, g.fr, > as.allele.pair =...

Hi Mr Tierney, I have noticed an error message from R 1.12.x's CMD check for a while (apparently prof Ripley completely rewrote CMD check in R 1.12+) e.g.: http://bioconductor.org/checkResults/2.7/bioc-LATEST/snpMatrix/lamb2-checksrc.html ---------------- * checking R code for possible problems ... NOTE Warning: non-unique value when setting 'row.names': ?new? Error in