Displaying 3 results from an estimated 3 matches for "mirbase".
2008 Oct 09
1
Reading zipped data directly from an FTP url
Hi
Sorry, I am clearly missing something here.
I want to read this file directly:
ftp://ftp.sanger.ac.uk/pub/mirbase/targets/v5/arch.v5.txt.gallus_gallus.
zip
I tried using
read.table(gzfile("ftp://ftp.sanger.ac.uk/pub/mirbase/targets/v5/arch.v5
.txt.gallus_gallus.zip"))
But I got an error:
Error in open.connection(file, "r") : cannot open the connection
In addition: Warning message:
In o...
2009 Jul 28
2
Looking for example of usage of function unz
I would greatly appreciate some example of correct usage of function unz.
I have to download and uncompress the following web compressef file:
ftp://ftp.sanger.ac.uk/pub/mirbase/targets/v5/arch.v5.txt.homo_sapiens.zip
I tried the following command that does not work:
Targets.rec <- readLines(zz <- unz("ftp://ftp.sanger.ac.uk/pub/mirbase/targets/v5/arch.v5.txt.homo_sapiens.zip"))
Thank you in advance,
Maura
tutti i telefonini TIM!
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2009 Jun 16
2
R and miRecords
I wonder whether R provides an interface to access miRecords data.
Particularly, I am looking for extracting humans miRNA and target genes sequences.
All such information is stored in there in a set of structured web site pages (http://mirecords.umn.edu/miRecords)
I would greatly appreciate any suggestion even about other data bases from where it is possible to get the same sort of data.
I had a