search for: mindij

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2013 Jun 22
1
metaMDS Error, Nan similar or negative values
...or handling them. metaMDSdist allow you to add a small value to the zero dissimilarities. The details are in the code, but effectively all zero distances are replaced by half the smallest non zero distance. You could do a similar replacement yourself if you feel this is warranted and/or justified. minDij <- min(Dij[Dij > 0) / 2 Dij[Dij <= 0] <- minDij But still I don't understand how can I modify the NaN values. In my data I don't have any NA values. All the cells are either +ve or zero. Please help me with this. Should I just replace all the NaN values with zero? Please advic...
2010 Jan 12
1
Non-metric multidimensional scaling (NMDS) help
Hi, I am currently working on some data and feel that NMDS would return an excellent result. With my current data set however I have been experiencing some problems and cannot carry out metaMDS. I have tried with a few smaller data sets which I created for practice sake and this has worked fine. I think it is the set up of my data set that is causing me trouble. I have 18 columns and 18 rows,