search for: metastatic

Hi Paul, Sounds like you have your answer, but for fun I thought I'd try solving your problem using only a regular expression query and base R. I believe this works: > txt <- "Patient had stage IV breast cancer. Nothing matches this sentence. Metastatic and breast match this sentence. French bike champion takes stage IV victory in Tour de France." > pattern <- "([^.?!]*(?=[^.?!]*\\bbreast\\b)(?=[^.?!]*\\b(metastatic|stage IV)\\b)(?=[\\s.?!])[^.?!]*[.?!])" > regmatches(txt, gregexpr(pattern, txt, perl=TRUE, ignore.case=TRU...

...ng out how to extract combinations of target words/terms from cancer patient text medical records. I've provided some sample data and code below to illustrate what I'm trying to do. At the moment, I'm trying to extract sentences that contain the word "breast" plus either "metastatic" or "stage IV". > >It's been some time since I used R and I feel a bit rusty. I wrote a function called "sentence_match" that seemed to work well when applied to a single piece of text. You can see that by running the section titled > >"Working code&quo...

...ibrary(tidyverse) library(stringr) library(lubridate) sentence_match <- function(x){ sentence_extract <- str_extract_all(x, boundary("sentence"), simplify = TRUE) sentence_number <- intersect(str_which(sentence_extract, "breast"), str_which(sentence_extract, "metastatic|stage IV")) sentence_match <- str_c(sentence_number, ": ", sentence_extract[sentence_number], collapse = "") sentence_match } sampletxt <- structure( list( PTNO = c(1, 2, 2, 2), DATE = structure(c(16436, 16436, 16832, 16845), class = "Date...

...ng out how to extract combinations of target words/terms from cancer patient text medical records. I've provided some sample data and code below to illustrate what I'm trying to do. At the moment, I'm trying to extract sentences that contain the word "breast" plus either "metastatic" or "stage IV". It's been some time since I used R and I feel a bit rusty. I wrote a function called "sentence_match" that seemed to work well when applied to a single piece of text. You can see that by running the section titled "Working code". I thought...

...ibrary(tidyverse) library(stringr) library(lubridate) sentence_match <- function(x){ sentence_extract <- str_extract_all(x, boundary("sentence"), simplify = TRUE) sentence_number <- intersect(str_which(sentence_extract, "breast"), str_which(sentence_extract, "metastatic|stage IV")) sentence_match <- str_c(sentence_number, ": ", sentence_extract[sentence_number], collapse = "") sentence_match } sampletxt <- structure( list( PTNO = c(1, 2, 2, 2), DATE = structure(c(16436, 16436, 16832, 16845), class = "Date...

...t combinations of target > words/terms from cancer patient text medical records. I've provided some > sample data and code below to illustrate what I'm trying to do. At the > moment, I'm trying to extract sentences that contain the word "breast" plus > either "metastatic" or "stage IV". > > It's been some time since I used R and I feel a bit rusty. I wrote a > function called "sentence_match" that seemed to work well when applied to a > single piece of text. You can see that by running the section titled > > "Work...

...efault "plot" or if I need to go with the lattice package. Suggestions much appreciated. plot(y, xlab="Survival Time (Months)", ylab="Survival Probability", mark.time=TRUE, col = c("red", "blue"),legend.text = c("Locally Advanced", "Metastatic"), main="Kaplan-Meier Curve of Survival Times - Stratified by Group", lwd=3) Thanks, _____________________________________________ Patrick Richardson Biostatistician - Program of Translational Medicine Van Andel Research Institute - Webb Lab 333 Bostwick Avenue NE Grand Rapids, MI...

Hi, We have a number of 4200''s setup using a combination of an SVM 4 way mirror and a ZFS raidz stripe. Each disk (of 4) is divided up like this / 6GB UFS s0 Swap 8GB s1 /var 6GB UFS s3 Metadb 50MB UFS s4 /data 48GB ZFS s5 For SVM we do a 4 way mirror on /,swap, and /var So we have 3 SVM mirrors d0=root (sub mirrors d10, d20, d30, d40) d1=swap (sub mirrors d11, d21,d31,d41)

Hi. bash-3.00# uname -a SunOS nfs-14-2.srv 5.10 Generic_125101-03 i86pc i386 i86pc I created first zpool (stripe of 85 disks) and did some simple stress testing - everything seems almost alright (~700MB seq reads, ~430 seqential writes). Then I destroyed pool and put SVM stripe on top the same disks utilizing the fact that zfs already put EFI and s0 represents almost entire disk. The on top on

running b37 on amd64. after removing power from a disk configured as a mirror, 10 minutes has passed and ZFS has still not offlined it. # zpool status tank pool: tank state: ONLINE status: One or more devices has experienced an unrecoverable error. An attempt was made to correct the error. Applications are unaffected. action: Determine if the device needs to be replaced, and clear

Today I attempted to upgrade to S10_U2 and migrate some mirrored UFS SVM partitions to ZFS. I used Live Upgrade to migrate from U1 to U2 and that went without a hitch on my SunBlade 2000. And the initial conversion of one side of the UFS mirrors to a ZFS pool and subsequent data migration went fine. However, when I attempted to attach the second side mirrors as a mirror of the ZFS pool, all

...do C programming all that often, so I can't say if I've left any cleanup/compatibility errors in the code. Also: <http://rsync.samba.org/lists.html> refers to the (now gone) smart-questions document on tuxedo.org, which should now be catb.org. Cheers, - -- Casey Marshall || rsdio@metastatic.org -----BEGIN PGP SIGNATURE----- Version: GnuPG v1.2.1 (GNU/Linux) Comment: Processed by Mailcrypt 3.5.7 <http://mailcrypt.sourceforge.net/> iD8DBQE/ih9xgAuWMgRGsWsRAp8RAJ0XyONLiOSDgHHAOBRNO6sZ/P2dRwCeKfu8 LEvhhkUglOm3xMyrdJT4u9Q= =aT/N -----END PGP SIGNATURE-----

Hi all, I have applied the patch at http://metastatic.org/source/rsync-ssl.patch to the rsync v2.6.2 tree, and have it installed between two hosts. Unfortunately the patch contains no docs, so I have no idea whether I've configured it correctly. Any attempt at making an rsync transfer bombs out with the error: [fma@chandler fma]$ rsync -a --...

https://bugzilla.samba.org/show_bug.cgi?id=1890 Summary: TLS for rsync protocol Product: rsync Version: 2.6.3 Platform: All URL: http://metastatic.org/source/rsync-ssl.patch OS/Version: Linux Status: NEW Severity: enhancement Priority: P3 Component: core AssignedTo: wayned@samba.org ReportedBy: totoro@ovh.net QAContact: rsync-qa@samba.org Hello, I found this page whi...

Greetings all- I have a new X4200 that I''m getting ready to deploy. It has four 146 GB SAS drives. I''d like to setup the box for maximum redundancy on the data stored on these drives. Unfortunately, it looks like ZFS boot/root aren''t really options at this time. The LSI Logic controller in this box only supports either a RAID0 array with all four disks, or a RAID 1

I''m seeing some pretty pitiful performance using ZFS on a NFS server, with a ZFS volume exported (only with rw=host.foo.com,root=host.foo.com opts) and mounted on a Linux host running kernel 2.4.31. This linux kernel I''m working with is limited in that I can only do NFSv2 mounts... irregardless of that aspect, I''m sure something''s amiss. I mounted the zfs-based

Just posted: http://blogs.sun.com/roch/entry/nfs_and_zfs_a_fine ____________________________________________________________________________________ Performance, Availability & Architecture Engineering Roch Bourbonnais Sun Microsystems, Icnc-Grenoble Senior Performance Analyst 180, Avenue De L''Europe, 38330, Montbonnot Saint