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...for instance). In this case, if the requirement was Distances == 0.2 Alpha Beta Alpha 1 2 Beta 2 0 This resulting table would be symmetrical. I hope I am able to convey what I would like, and TIA for your help! Karin -- Karin Lagesen, PhD student karin.lagesen at medisin.uio.no http://folk.uio.no/karinlag

...0 to 1, so I?d like to plot the median and quantiles, and possibly also all of the outliers somehow. Are there any facilities in R for doing something like this, or would I need to do this the hard coded way? Thankyou very much for your help! Karin -- Karin Lagesen, PhD student karin.lagesen at medisin.uio.no http://folk.uio.no/karinlag

...V1 and c$V1 in separate plots simply using plot(), how do I put them next to each other? I am sorry if this is a FAQ, but I cannot understand what it says in the guide and the wonderful google couldn't turn up anything helpful either...:) Karin -- Karin Lagesen, PhD student karin.lagesen at medisin.uio.no http://www.cmbn.no/rognes/

...) before every new plot command, I have however not found any explanation of what this actually does. ?plot.new does give an explanation, but it is explained in R, so to speak. Where do I find out what for instance a graphics frame is? Thanks, Karin -- Karin Lagesen, PhD student karin.lagesen at medisin.uio.no http://www.cmbn.no/rognes/

...called PID in the data frame. Any hints on how to do this? cbind just adds the vector onto the end, and I couldn't quite figure out if I could somehow say that the level should correspond to the PID. Thanks a lot for your helpin advance:) Karin -- Karin Lagesen, PhD student karin.lagesen at medisin.uio.no http://folk.uio.no/karinlag

...to calculate each column. But, I want each column split in three, where the size of each coloured area represents the proportions of the values in that column that comes from each of the three classes. Do you have any tips on how I do this? Karin -- Karin Lagesen, PhD student karin.lagesen at medisin.uio.no http://www.cmbn.no/rognes/

...should go? Also, the boxplot.stats page talks about "hinges", what are those? "The two "hinges" are versions of the first and third quartile, i.e., close to 'quantile(x, c(1,3)/4)'." Thankyou very much. Karin -- Karin Lagesen, PhD student karin.lagesen at medisin.uio.no http://www.cmbn.no/rognes/

...proceed. Should I deconstruct the data frame within the function, or should I get just the numbers out of the factors and input that into the function? Or is my solution way off from how things are done in R? Thankyou very much for your help! Karin -- Karin Lagesen, PhD student karin.lagesen at medisin.uio.no http://folk.uio.no/karinlag

...on the webpage this comes out with a nice gray background that makes things easier to see. Mine comes out with a white, potentially transparent background and also the point colors have changed. How do I get the nice gray color back? Thanks! Karin -- Karin Lagesen, PhD student karin.lagesen at medisin.uio.no http://folk.uio.no/karinlag

...t$V1 ,col=c("lightblue","orange","lightblue","orange","lightblue","orange") ,horizontal = TRUE, main="EUK", xaxs = "i") Karin (sorry if you're getting sick of me..:)) -- Karin Lagesen, PhD student karin.lagesen at medisin.uio.no http://www.cmbn.no/rognes/

...t deviation above the other, and I have had three groups within each vioplot. I would now like to have these two next to each other, each with their own zero point. Does anybody have any tips on how to achieve this? Any help much appreciated. Karin -- Karin Lagesen, PhD student karin.lagesen at medisin.uio.no http://www.cmbn.no/rognes/

...n. Is this correct, or am I just bungling it somehow? For instance, for vioplot (from the example shown, with the horizontal modification): > vioplot(bimodal,uniform,normal, horizontal=TRUE) Error in median(data) : need numeric data > Karin -- Karin Lagesen, PhD student karin.lagesen at medisin.uio.no http://www.cmbn.no/rognes/

...E 0.6021728 0.5027095 > >From this I want to get a new data frame which contains the z scores based on the values found in each row. For instance for element [C,y], I would like to calculate (-0.3602656 - mean(column y)/stddev(column y)). Thanks! -- Karin Lagesen, Ph.D. karin.lagesen at medisin.uio.no http://folk.uio.no/karinlag

hi, i am not able to extract the p-values from the Manova function in the car library. I need to use this function in a high-throughput setting and somehow need the p-values produced. Any ideas? Best regards Bettina Kulle Andreassen -- Bettina Kulle Andreassen University of Oslo Department of Biostatistics and Institute for Epi-Gen (Faculty Division Ahus) tel: +47 22851193 +47 67963923

...downscaling the pointsize. None of these improved anything much. So, now I am wondering if any of you have any tips for how I can get something like I get in the x11() window which I can also store and potentially show other people. Thanks! Karin -- Karin Lagesen, PhD student karin.lagesen at medisin.uio.no http://folk.uio.no/karinlag

...as rows down the right, feature on the top, and a count of each kind of feature within each grp? I realize that this is probably pretty easy to do, but I do not know enough R yet to know which words to look for in the mail archives...:) TIA, Karin -- Karin Lagesen, PhD student karin.lagesen at medisin.uio.no http://folk.uio.no/karinlag

...has these ys: 4,3,1,4, two are the same, ergo 3 No 3 # No has these ys: 1,4,5 Perhaps 2 # Perhaps has these ys: 2,4,2 My dataframe has lots of other colums too, but I only want this information out. Thankyou for your help! Karin -- Karin Lagesen, PhD student karin.lagesen at medisin.uio.no http://folk.uio.no/karinlag

...ri, value = "more") : invalid factor level, NAs generated Now, this is a pain in the neck. How can I merge these lists to the data frame and still have the value $twogrp as a factor? Thanks, and I hope my code makes some sense! Karin -- Karin Lagesen, PhD student karin.lagesen at medisin.uio.no http://folk.uio.no/karinlag

Full_Name: Harald Weedon-Fekj?r Version: 2.0 OS: Windows Submission from: (NULL) (80.202.87.143) Dear R core Thanks again for a superb program. This is really one of the rare instances I find a bug. The bug is easy to bypass, but can be quite confusing; "Rcmd check" seems to fail without any good error report if the package contains a certain amount of R code and is run from a

...contents become negative. An I misunderstanding how to use the ifelse construct? And in that case, how should I go about doing this in a different way? Thankyou very much in advance for your help, and I hope that my question is not too banal! Karin -- Karin Lagesen, PhD student karin.lagesen at medisin.uio.no http://folk.uio.no/karinlag