search for: mcoyne

...ype 'application/zip' length 893989 bytes (873 Kb) opened URL downloaded 873 Kb package 'R.oo' successfully unpacked and MD5 sums checked package 'R.utils' successfully unpacked and MD5 sums checked The downloaded packages are in C:\Documents and Settings\mcoyne\Local Settings\Temp\Rtmpjhahhp\downloaded_packages updating HTML package descriptions However, when I tried to load the package aroma.affymetrix I got the following error: > library (aroma.affymetrix) Error in library(aroma.affymetrix) : there is no package called 'aroma.af...

...y Windows (XP SP2) system with error popup "The procedure entry point Rf_allocString could not be located in the dynamic link library R.dll". Thanks in advance for any suggestion in solving the error. My D. Coyne Imagination is more important than knowledge... (Albert Einstein) mcoyne@boninc.com BioInformatics Enthusiast Office: 301-865-0243 Cell: 301-399-6351 [[alternative HTML version deleted]]

Hi All, I'm new with R; this is a basic question. I was given a matrix I of (nrow, ncol), I would like to create another matrix A with some data in the matrix I, say [1,4] (row 1, column 4) to [271,19000] (row 271, column 19000). How do I do this? Please help. Thank you very much. --mc [[alternative HTML version deleted]]

Hello, I received the following warning when running chi-square; n Is there a way to catch the 'error' code of 'warning' after run chisq.test(x)? n What does this error mean? Thank you for your help. [[alternative HTML version deleted]]

...4 Scope:Link UP BROADCAST RUNNING NOARP MTU:1500 Metric:1 RX packets:102 errors:0 dropped:0 overruns:0 frame:0 TX packets:23338 errors:0 dropped:0 overruns:0 carrier:0 collisions:0 txqueuelen:32 RX bytes:8553 (8.3 KiB) TX bytes:1616099 (1.5 MiB) mcoyne@styx.pbdenton.paccar.com:/home/mcoyne # ethtool -k vif3.0 Offload parameters for vif3.0: Cannot get device rx csum settings: Operation not supported Cannot get device udp large send offload settings: Operation not supported rx-checksumming: off tx-checksumming: off scatter-gather: off tcp segmentat...

Hello, Newbie question and hope you can help . I have two vector V1 and V2, where length(V2) = length of (V1) * 2; length(V1) ~ 16,000. For each member in V1, I need to compare 2 element of V2 for equality i.e. for (I in 1:length (V1)) { if ( v2[i] == v1[i] & v2[i+1]==v1[i] ){ statement_1 statement_2 . } } This for-loop is too slow

Hi, I place a t.test in a loop and would like to continue to process the loop even when t.test encounter error. How do I do that? For example, in one iteration, the data is completely constant and t.test gives error, the entire program terminates. I would like to write the information out to a file, and the loop should continue. Thanks My D. Coyne [[alternative HTML version

R-newbie question I have 2 matrices (a) P1 has only one column of 32K rows (b) PC has 2 column {P, C} of 3200 rows Every values in P1 matches with a value in PC[,p] (column p). I would like to use Which to search for all value in P1 that matchex PC[,p] and get the PC[,c]. However because P1 and PC does not have the same number of rows, I got lots of 'NA'. Thanks for your

Hello, I would like to run a series of chisq.test() and store results (x-square, df, p-value) in a matrix for further analysis, but don't know how to do such. Currently I run the command line for each set of data at a time and it is time consuming. Thank you for your help. --My Coyne [[alternative HTML version deleted]]

I'm ordering "The R Book" and hope to learn a lot more about R. In a meantime, I have a matrix of digits and I would like to look for a column that contains zeroes and remove the entire column from the matrix. I can write a piece of R code to do that (and it works); however, I think the R-experts have more tricks to do such a 'simple' thing. Many thanks in advance.

I'm running samr (Two class unpaired), but keep getting the following error: perm= 1 Error in if (logged2) { : argument is of length zero <code> library (impute) library (samr) data = list (x=dat, y=y, geneid = matrix(twoUnpaired.data[,1],ncol=1), genenames = matrix(twoUnpaired.data[,2], ncol=1)) samr.obj <- samr (data, resp.type="Two class unpaired", nperms=100)