search for: mccammon

Displaying 4 results from an estimated 4 matches for "mccammon".

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2005 Apr 27
0
GPArotation package
...Criterion geominT orthogonal geominQ oblique cfT orthogonal Crawford-Ferguson family cfQ oblique Crawford-Ferguson family infomaxT orthogonal infomaxQ oblique mccammon orthogonal McCammon minimum entropy ratio Other rotations can be fairly easily added simply by coding a small function to calculate the rotation criterion objective function, and its gradient. A detailed example of gradient computation is in the paper mentioned above. Paul Gilbert and Coe...
2005 Apr 27
0
GPArotation package
...Criterion geominT orthogonal geominQ oblique cfT orthogonal Crawford-Ferguson family cfQ oblique Crawford-Ferguson family infomaxT orthogonal infomaxQ oblique mccammon orthogonal McCammon minimum entropy ratio Other rotations can be fairly easily added simply by coding a small function to calculate the rotation criterion objective function, and its gradient. A detailed example of gradient computation is in the paper mentioned above. Paul Gilbert and Coe...
2010 Jan 03
2
bio3d package not installing
Is it just me, or is the bio3d package no longer available? Is there another way to do a reasonable nucleic acid sequence alignment in R? Thanks, Jonathan [[alternative HTML version deleted]]
2010 Feb 10
3
Using R to format a file using a server (PDB to PQR file)
I am trying to write a program that uses R and takes a pdb file, and converts it to a pqr file. This task is simple generally, using the website, http://pdb2pqr-1.wustl.edu/pdb2pqr/. How do you use R to input a pdb file (that is on hand) into the upload pdb file input, and run the website and give the return file to be a pqr file. Thanks for your help. -- View this message in context: