Displaying 4 results from an estimated 4 matches for "mbmdr".
2011 May 18
1
Covariable Logistic Regression In R
...I have had the luck previously of using a software
package that just does it) and I am coming up empty handed. Any experience
or insights would be greatly appreciated.
There is a package that does do exactly what I want, with the exception that
it requires very specific data input, it is called : mbmdr. My input
consists of various clinical variables measured from patients as well as
expression data from various genes. What I would like to do is identify
significant genes while considering their interactions with the various
clinical variables.
Thank you,
Ana
[[alternative HTML version dele...
2012 Aug 24
0
A question about GRAMMAR calculations in the FAM_MDR algorithm
...ot;
phenofil="pheno1.dat"
mapfile="simulation.map"
# solver settings
npermute = 1000 # fixed number of permutations, 1000 is
recommended
alpha = 0.05 # type-I error
Pval = 0.1 # significance level at first step of
mbmdr
set.seed(1982) # for reproducibility
# loading libraries and code
library(kinship2)
library(GenABEL)
source("mbmdr_gaussian.r")
# removing all possible existing files first as a safety measure
file.remove("permoutput.txt")
file.remove("simulation.raw&q...
2010 Mar 14
3
CRAN (and crantastic) updates this week
...ckage is in its integration of user-friendly functions to
complete most of the statistical steps involved in a meta-analysis
with mean differences. It uses recommended procedures as described
in The Handbook of Research Synthesis and Meta-Analysis (Cooper,
Hedges, & Valentine, 2009).
* mbmdr (2.0)
Victor Urrea
http://crantastic.org/packages/mbmdr
Model Based Multifactor Dimension Reduction proposed by Calle et al.
(2008) as a dimension reduction method for exploring gene-gene
interactions.
* minqa (1.1)
Katharine Mullen
http://crantastic.org/packages/minqa
Derivative...
2010 Jul 18
6
CRAN (and crantastic) updates this week
...rog (0.9-0), lme4 (0.999375-34), logging (0.4-42),
logistf (1.10), longitudinalData (0.6.5), lordif (0.1-5), ltm (0.9-4),
maanova (1.18.0), MAc (1.1), MAd (0.8), mapdata (2.1-3), maps (2.1-4),
maptools (0.7-34), marelac (2.1), MASS (7.3-7), Matrix (0.999375-42),
matrixStats (0.2.1), maxLik (0.7-2), mbmdr (2.1), mboost (2.0-6), mc2d
(0.1-8), mclust (3.4.4), mcmc (0.8), mco (1.0.9), mecdf (0.4.1),
memisc (0.95-30), meta (1.6-0), MetabolAnalyze (1.1), metafor (1.3-0),
mgcv (1.6-2), mhsmm (0.3.5), mi (0.09-11), micEcon (0.6-4),
micEconAids (0.6-4), minet (2.4.0), minqa (1.1.8), miscTools (0.6-2),
mitoo...