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mattner
2009 Feb 09
1
How to avoid losing a sample as reference running an individual differential expression analysis (LIMMA)
Hello listmemebers,
I have data from two-color microarray expression profiling experiments where 3 whole brain (WB) samples were compared to 3 Mauthner Cells (MC) in a loop design (-> MC #1 -> WB #1 -> MC #2 -> WB #2 -> MC #3 -> WB #3 -> MC #1 ->). In addition to phenotype analysis I would also like to run an individual analysis making all pair-wise comparisons. I'm using the LIMMA package in R to do this. The problem i...