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matrixissue
2023 Aug 06
3
A demonstrated shortcoming of the R package management system
...a
discussion about enhancing its feature set. As shown below, a mechanism to
force reinstallation of packages may be needed.
A demo is included below, it is reproducible in a container. We find the
easiest/fastest reproduction is by saving the code snippet below in the
current directory as eg 'matrixIssue.R' and have it run in a container as
docker run --rm -ti -v `pwd`:/mnt rocker/r2u Rscript /mnt/matrixIssue.R
This runs in under two minutes, first installing the older Matrix, next
installs SeuratObject, and then by removing the older Matrix making the
(already installed) current Matrix...