search for: martservice

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2009 Jun 16
1
Error using getBM() to query BioMart archives
...;m able to do this without issue. However, I need to use build 36 of the mouse genome which was last included in ensembl mart 46. I selected this mart and the mouse dataset as follows: mart<-useMart(biomart="ensembl_mart_46", host="www.biomart.org", path="/biomart/martservice", port=80, archive=TRUE) mart<-useDataset("mmusculus_gene_ensembl", mart=mart) I'm able to list the available attributes and filters just fine, but when I attempt to actually retrieve data using getBM() I receive the following error: > genes<-getBM(attributes=c(&...
2018 Mar 21
0
Error in GDCprepare step of TCGAbiolinks
...es.html => Adding subtype information to samples luad subtype information from:doi:10.1038/nature13385 Request to BioMart web service failed. The BioMart web service you're accessing may be down. Check the following URL and see if this website is available: http://www.ensembl.org:80/biomart/martservice?type=registry&requestid=biomaRt Request to BioMart web service failed. The BioMart web service you're accessing may be down. Check the following URL and see if this website is available: http://uswest.ensembl.org:80/biomart/martservice?type=registry&requestid=biomaRt&redirect=no Err...