Displaying 2 results from an estimated 2 matches for "martservice".
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2009 Jun 16
1
Error using getBM() to query BioMart archives
...;m able to do this without issue. However, I need to use
build 36 of the mouse genome which was last included in ensembl mart
46. I selected this mart and the mouse dataset as follows:
mart<-useMart(biomart="ensembl_mart_46", host="www.biomart.org",
path="/biomart/martservice", port=80, archive=TRUE)
mart<-useDataset("mmusculus_gene_ensembl", mart=mart)
I'm able to list the available attributes and filters just fine, but
when I attempt to actually retrieve data using getBM() I receive the
following error:
> genes<-getBM(attributes=c(&...
2018 Mar 21
0
Error in GDCprepare step of TCGAbiolinks
...es.html
=> Adding subtype information to samples
luad subtype information from:doi:10.1038/nature13385
Request to BioMart web service failed.
The BioMart web service you're accessing may be down.
Check the following URL and see if this website is available:
http://www.ensembl.org:80/biomart/martservice?type=registry&requestid=biomaRt
Request to BioMart web service failed.
The BioMart web service you're accessing may be down.
Check the following URL and see if this website is available:
http://uswest.ensembl.org:80/biomart/martservice?type=registry&requestid=biomaRt&redirect=no
Err...