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mariadb
2006 Jul 10
2
pvclust missing values problem
...p36_33 1 0 0 1
1p36_32 -1 0 -1 0
1p36_31 0 1 1 1
1p36_22 0 -1 -1 -1
etc.... where 0 = no change, 1 = gain, -1 = loss
I have read this file into R using:
> ProgenetixCRC.all.noXY <- read.table("/home/marraydb/Progenetix/Data/CRCall_noXY.txt", header=TRUE, sep="\t", row.names="band")
based on the pvclust documentation I came up with this:
>ProgenetixCRC.all.pvclust <- pvclust(ProgenetixCRC.all, method.dist="cor", method.hclust="average",use.cor="pa...