search for: manisha

...owing R statements: exprs.new<-gsub("P",1,exprs) exprs.new1 <- gsub("A",0,exprs.new) exprs.new2 <- gsub("M",1,exprs.new1) The replaced integers are stored as characters and I cannot find a way to convert the matrix to an integer matrix. Thanks manisha [[alternative HTML version deleted]]

...ew("exprSet", exprs=as.matrix(geneExpr.log), phenoData=pD) I get the following error: The phenoData class is deprecated, use AnnotatedDataFrame (with ExpressionSet) instead Can someone suggest me how to use the new method AnnotatedDataFrame to create eSet? Thanks Manisha [[alternative HTML version deleted]]

Full_Name: Manisha Desai Version: 1.3.0 OS: UNIX Submission from: (NULL) (156.111.36.213) There may be a bug in the table command. The value of 0 does not appear to show up (at least in this version of R). The following is an example: > blah<-c(rep(1,100),rep(0,100)) > table(blah) Gives the following...

Hello, I have a matrix with 6 columns and 12 rows. I want to extract out those IDs (rownames) from my matrix which have a negative values. For each ID(row) if the negative value is even under 1 column it needs to be extracted out. I will be grateful for any correct suggestion. Thanks Manisha Here is the matrix that I am working on: ID A B C D E F 1 -4.18972 -3.8946 -1.14888 -1.88406 -8.34124 10.97497 2 11.81028 11.1054 0.85112 0.115942 -4.34124 24.97497 3 -0.18972 -1.8946 1.85112 -4.88406 -17.3412 -13.025 4 -1.18972 3.105402 -0.14888 -12.8841...

...script I have written is below( which doesnot do the job properly) median.value<- matrix(nrow=nrow(data),ncol=1) for(k in 1:nrow(data)){ median.value[k]<-median(data[which(data[k,]>0)])} Can someone suggest me the correct R script to do what I have explained above. Thanks Manisha [[alternative HTML version deleted]]

...00 2.00 2 2.00 1-Sep 2 2 2 2.00 2.00 2.00 2 2.00 2-Sep 2 2 2 2.00 2.00 1.39 2 2.00 6-Sep 2 2 2 2.00 2.00 2.00 2 2.00 8-Sep 2 2 2 1.05 2.00 2.00 2 2.00 9-Sep 2 2 2 2.00 2.00 2.00 2 2.00 Manisha [[alternative HTML version deleted]]

...ipt.out I have used the "-save" command to save the R workspace (If, I understand it correctly) . However, I am unable to find the workspace file. Using find .RData did not help. I would be obliged if someone can help me figure out where the workspace file gets saved? Thanks manisha [[alternative HTML version deleted]]

Manisha, I'm still here. :-) Here's the function: // Returns the average power level in the given signal float getPower(signed short int *signal, int numSamples) { int i; float amp; float powerSum = 0.0f; for (i = 0; i < numSamples; i++) { amp = (float) abs(signal...

...I have a data where the range of the x -axis is from 0.0-1.0. When I use hist the ticks on the x-axis it gives me by default is at 0.0,0.2,0.4,0.6,0.8 and 1.0. If I want more ticks such that the x-axis has 0.0,0.1,0.2,0.3...till 1.0 what parameter should I use in the hist function? Thanks manisha [[alternative HTML version deleted]]

...uot;Smc4" "8927" "1426653_at" "8926" "4.45317231159082" "0.319591808000491" "0.0717672224738867" "1.24728944266546" "4.80974775545105" "Mcm3" Thanks in advance. Manisha [[alternative HTML version deleted]]

...41.4842 913.0246 10 653.1272 751.5218 750.1758 737.3821 757.8486 758.2407 724.2186 770.8669 11 653.1272 751.5218 750.1758 737.3821 757.8486 758.2407 724.2186 770.8669 12 839.735 943.4456 950.7575 859.0208 894.246 853.5241 941.4842 913.0246 Thanks in advance Manisha Mount Sinai School of Medicine Icahn Medical Institute, 1425 Madison Avenue, Box 1498 NY-10029, NEW-YORK, USA [[alternative HTML version deleted]]

...uot; "2260458" "60689" ... .. ..$ : NULL I want to convert it to a matrix like this: ID 1 2 3 6420681 0.1332478 3.15862 3.214367 3610072 0.6219358 0.265226 0.276525 2260458 0.5876415 0.522378 1.44687 60689 1.0240852 1.911613 1.827464 Thanks Manisha [[alternative HTML version deleted]]

...ervlets Strong knowledge of design patterns, re-factoring and unit testing Experience with relational databases is a plus Excellent written and oral communication skills Experience with application servers - JBOSS 3.2x Experience XML and XML Schema - castor desired Manisha Chugh, PHR Indusa Technical Corporation 1751 South Naperville Road, Suite 107 Wheaton, IL 60187 Ph: 913-897-0931 Fax: 630-871-7680 manisha@indusa.com

...loglogistic hazard estimation (chenjiakai) > 38. Re: RPostgreSQL segfault with LEFT JOIN (Joe Conway) > 39. Re: Journal Articles that Have Used R (Jonathan Baron) > 40. stars (as fourfold plots) in plot (symbols don't work) (maiya) > 41. extract rows having negative values (Manisha Brahmachary) > 42. Convert a lis to matrix (Manisha Brahmachary) > 43. Re: extract rows having negative values (Bill.Venables at csiro.au) > 44. Re: EBImage not loading (Gregoire Pau) > > > ---------------------------------------------------------------------- > > Mess...

Is there any update on this implementation of Fixed-point AGC? We tested the code from Thorvald Natvig. If we can get some idea about the scaling factors - how to set/ calculate for the float to fix conversion, we will try to get up this code. Thanks Regards Manisha Tidke -------------- next part -------------- An HTML attachment was scrubbed... URL: http://lists.xiph.org/pipermail/speex-dev/attachments/20080627/bf17d581/attachment.htm

...eference section) and when I run the line: fit<-lmFit(xen1dataeset,design), I get the error message: Error in lm.fit(design, t(M)) : incompatible dimensions I will really appreciate if someone can help me understand this error message and possibly help me debug the problem. Thanks manisha Reference section xen1data<-ReadAffy() # Read Affy dataset cell files xen1dataeset<-gcrma(xen1data) # Normalize with GCRMA write.exprs(xen1dataeset,file="xen1_exprs") # write normalzed expression values >str(exprs(xen1dataeset)) num [1:22690, 1:2] 12.0 11.3 1...

Hi, I am trying to integrate solr in ruby on rails application.For that i am using the plugin acts_as_solr and gem solr-ruby. My solr server starts successfully with command $ rake solr:start But when I try to add data from $ script/console , it says that it cannot connect to solr server at the corresponding port.Same is the result if i try the browser to link to http://localhost:8982/solr

...incremented object name and increment function (Greg Snow) 68. Re: complex transformation of data (Den) 69. Help with LMSreg (eniven) 70. TRADUCING lmer() syntax into lme() (Freddy Gamma) 71. building package (las65@buffalo.edu) 72. Re: Pearson correlation with randomization (Brahmachary, Manisha) 73. glitch in building R package (Horace Tso) 74. Re: building package (Duncan Murdoch) 75. Re: complex transformation of data (Den) 76. Re: How to find data that includes certain values (Den) 77. lm(y ~ x1) vs. lm(y ~ x0 + x1 - 1) with x0 <- rep(1, length(y)) (jochen laubrock) 78. R...

Hi, I got Mac OS X 15.6 installed, Locomotive 2.0.8 and MYSQL 5.0.67 running. I''m having this problem when I try to install mysql gem: Last login: Mon Feb 9 13:37:37 on ttys001 source /var/folders/be/bexGvm9pHdq0vcEmR8-WWk+++TM/-Tmp-//39E424DB-A260-4E41-AA2E-30B64FB46F3C-7395-00002254065EA712.environment.bash You have mail. MBPEduCirilo:~ eduardocirilo$ source

Sir, I get the following error after I have downloaded entire llvm libraries and then compiled the llvm IR code generator code. fatal error: 'llvm/IR/DerivedTypes.h' file not found #include "llvm/IR/DerivedTypes.h" ^ 1 error generated. Could you please tell me as to why is the above error generated ? And how should I proceed further ? Thanks and Regards Radzz --------------