search for: malignant

Using the same settings in config.site as were used for R-1.4.1, R-1.5.0 fails to build. ./configure --enable-R-shlib Using defaults and using PPro optimizations, the build failed in package methods: dumping R code in package 'methods' gmake[4]: *** [../../../library/methods/R/all.rda] Error 139 gmake[4]: Leaving directory `/mnt/Data/src/install/R-1.5.0/src/library/methods' The

Hello R-help. I am trying to make a stacked barplot where the color of the sections of each bar depend on another variable. > myData[1:11,] score percent marker cellType Malignant 1 0 100.00000 ESR1 (ER) Bladder.M(5) TRUE 2 0 80.00000 PAX8 Bladder.M(5) TRUE 3 1 20.00000 PAX8 Bladder.M(5) TRUE 4 0 100.00000 ESR1 (ER) Brain.N(3) FALSE 5 0 100.00000 PAX8 Brain.N(3) FALSE 6 3 100.00000 ESR1 (ER) Breast.M(11) TRUE 7 0 100.00...

aa056@chebucto.ca wrote: > > Using the same settings in config.site as were used for R-1.4.1, > R-1.5.0 fails to build. > > ./configure --enable-R-shlib > > Using defaults and using PPro optimizations, the build failed in > package methods: > > dumping R code in package 'methods' > gmake[4]: *** [../../../library/methods/R/all.rda] Error 139 >

On FreeBSD 4.7 I noticed that when compiling kernel modules, the kernel options are not available to the modules. For example, my if_em.ko is not being compiled with the DEVICE_POLLING configuration It looks like "-include opt_global.h" is not being applied when compiling the module. Kernel compilation of if_em.c: cc -c -O2 -pipe -malign-loops=4 -malign-jumps=4 -malign-functions=4

I was just looking at the documentation for g77 and noticed the following, and also noticed that it is not used when fortran for a package is compiled with the default (i.e. no Makefile in src directory.) Should it be considered? Paul Gilbert _____ `-malign-double' (Intel x86 architecture only.) Noticeably improves performance of `g77' programs making heavy use of

On Mon, Feb 24, 2003 at 05:26:32PM -0800, H. Peter Anvin wrote: > Greg has taken on the job of integrating klibc with the kernel, but > please post klibc bug reports to the klibc mailing list at > <klibc@zytor.com>. To avoid annoying warning from gcc I had to check for compatibility with -falign-* like we do in arch/i386/Makefile. check_usergcc located in top-level makefile to

Hi folks, I haven't tested initramfs with klibc before and am having trouble getting going. I tried to pull from the klibc-2.5 bk repository but it doesn't merge with 2.6t2. Also i downloaded the .80 version and tried to compile but got a stream of errors and warnings. It looks like it needs to be compiled from within the kernel tree but i couldn't find any docs about the

I am trying to build syslinux under gentoo on in 64 bit mode on an opteron. I get output like this ../com32/include/com32.h: In function `MK_PTR': ../com32/include/com32.h:77: warning: cast to pointer from integer of different size gcc -I../com32/include -g -Wall -O2 -fomit-frame-pointer -march=i386 -malign-functions=0 -malign-jumps=0 -malign-loops=0 -DVERSION='"2.06"'

Hi, I just tried compiling the latest release, but found some new problems: - Some versions of binutils could not link any shared binaries. One example for a broken version is 2.11.92.0.12.3, while 2.13.90.0.4 works. The error message looks like: tests/nfs_no_rpc.o: In function `root_nfs_parse': tests/nfs_no_rpc.o(.text+0x8): undefined reference to `strchr'

Hello, I have 50 raters and 180 cases which are rated as malignant, probably malignant, probably benign, and benign. I want to compare all the raters but I want a weighted kappa to penalize differences between malignant and benign more than differences between malignant and probably malignant. I only found the weighted option in the 2-rater functions (kappa2,...

I get the following error: make[1]: Entering directory `/home/greg/src/klibc/klibc-0.196/klibc' gcc -Wp,-MT,__static_init.o,-MD,./.__static_init.o.d -march=i386 -Os -g -malign-functions=0 -malign-jumps=0 -malign-loops=0 -nostdinc -iwithprefix include -D__KLIBC__ -DBITSIZE=32 -I.. /include/arch/i386 -I../include/bits32 -I../include -I../linux/include -I../linux/include2 -I ../linux/include

I tried building with linux-2.6.0-test7 build dies with: make[1]: Entering directory `/home/rogelio/src/klibc-0.80/klibc' gcc -Wp,-MD,./.fork.d -march=i386 -Os -fomit-frame-pointer -malign-functions=0 -malign-jumps=0 -malign-loops=0 -nostdinc -iwithprefix include -I../klibc -I../klibc/arch/i386/include -I../klibc/include/bits32 -D__KLIBC__ -DBITSIZE=32 -I../klibc/include

Hey all. Ok, so I'll stand up and be counted a newbie in this list too (just did the same for the General discussion list). I (once again) read through the archives, especially the ones concerning the comment field. First, I'm not a developer, per se. I'm merely an anal-retentive power user of such things, who likes to have my music archived, and sorted. In reading through the

https://bugzilla.netfilter.org/cgi-bin/bugzilla/show_bug.cgi?id=46 Summary: ..patch-o-matic: nfnetlink_conntrack.c or -.h ... compile failure: Product: netfilter/iptables Version: patch-o-matic Platform: i386 OS/Version: RedHat Linux Status: NEW Severity: blocker Priority: P2 Component:

Memdisk still won't build because gcc doesn't always inline functions. Here's a patch I used. --- memdisk/Makefile.orig 2004-01-24 16:37:22.000000000 -0500 +++ memdisk/Makefile 2004-08-18 06:34:53.000000000 -0400 @@ -17,11 +17,12 @@ then echo $(1); else echo $(2); fi) M32 := $(call gcc_ok,-m32,) +MINLINE := $(call gcc_ok,-minline-all-stringops,)

Has anybody tried to to compile SAMBA using gcc under SCO unix 5? This may just be a problem I'm having using the gcc compiler, but I'm having problems. I would just like to know if anyone's done it, and any special problems they may have had. ______________________________________________________ Get Your Private, Free Email at http://www.hotmail.com

to> A short time ago I recieved a reply to a query to> about compiling samba with the freeware gcc under to> sco unix. Im sorry, Ive misplaced your Email to> address and WEB address (which was in italian). to> Sorry to use this forum as a contact point, but to> can you contact me again? Thanks. to> to> Tony Nichols The WEB page is at

Hello, I am trying to set a computer running FreeBSD 4.8-STABLE so that it can boot using a serial console. To this effect I am trying to compile new boot blocks, but I get this error: casa# cd /usr/src/sys/i386/boot/biosboot && make cc -O2 -malign-functions=0 -malign-jumps=0 -malign-loops=0 -DBOOTWAIT=5000 -DTIMEOUT= -DBOOTSEG=0x1000 -DBOOTSTACK=0xFFF0 -Wall -Wredundant-decls

Since the decoding went so much faster, I actually listened to the song I encoded all the way to the end, at which point the thing segv'd. Through a little easter egging, I managed to trace the problem down to a call to vorbis_dsp_clear(). I've just commented it out in the current source. As to why it's segving I am uncertain, but, save possible memory leaks, everything seems to be

Hi, I'm trying to compile Wine cvs on this system: debian potato libc6 2.1.3 gcc 2.95.3 (upgraded) binutils 2.12.2 (upgraded) X 4.2 (upgraded) Nvidia drivers from Nvidias website (libGL 1.3) I get the following errors, I've tryied to compile this several times with tools/wineinstall and also 'configure && make depend && make', with and without these CLFAGS