Displaying 2 results from an estimated 2 matches for "makepdinfopackage".
2009 Mar 17
1
Need to build package for Affy HT HG-U133+ PM arrays
...d mismatches.
I'm looking to build cdf and probe packages, if possible, but have yet to
find any documentation on how to go about this using newer chips. I've
also tried building pdInfo packages using pdInfoBuilder from CDF, csv
annotation, and tab probe files downloaded from Affy, and
makePdInfoPackage() fails like so:
makePdInfoPackage(pkg, destDir="/home/mcininch/hthgu133pluspm")
Creating package in /home/mcininch/hthgu133pluspm/pd.ht.hg.u133.plus.pm
Error in data.frame(pmi = batchMat[isPm, "indices"], mmi = batchMat[!isPm,
:
arguments imply differing number of rows:...
2009 Jan 27
1
Problem with RMA using limma, oligo and pdInfoBuilder packages
...e-marie.madore.1@ulaval.ca", version="0.0.1",
+ genomebuild="RefSeq April 3, 2007, GenBank® January 25, 2007, Rat Ensembl
transcripts April 3, 2007 ",
+ biocViews="AnnotationData", pgfFile=pgfFile, clfFile=clfFile,
transFile=transFile, probeFile=probeFile)
> makePdInfoPackage(pkg, destDir=".")
Creating package in ./pd.ragene.1.0.st.v1
loadUnitsByBatch took 50.51 sec
loadAffyCsv took 12.73 sec
loadAffySeqCsv took 57.62 sec
DB sort, index creation took 24.75 sec
[1] TRUE
Warning messages:
1: In is.na(x) : is.na() applied to non-(list or vector) of type...