Displaying 2 results from an estimated 2 matches for "major_allel".
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major_allele
2010 Nov 29
3
how to use by() ?
Hello, All!
How might one accomplish this using the by() function?
m1 is a data frame.
# populate column "m1$major_allele"
for ( i in 1:length(m1$major_allele)) {
if ( m1$Freq1[i] == m1$MAF[i]){
m1$major_allele[i] = m1$Al1[i]
}
else{
m1$major_allele[i] = m1$Al2[i]
}
}
Jim
[[alternative HTML version deleted]]
2010 Nov 29
2
FW: how to use by() ?
...mple code for you or anyone else who may be interested:
Al1 = c('A','C','C','C')
Al2 = c('G','G','G','T')
Freq1 = c(0.0078,0.0567,0.9434,0.9908)
MAF = c(0.0078,0.0567,0.0566,0.0092)
m1 = data.frame(Al1=Al1, Al2=Al2,Freq1=Freq1,MAF=MAF,major_allele='')
m1
Al1 Al2 Freq1 MAF major_allele
1 A G 0.0078 0.0078
2 C G 0.0567 0.0567
3 C G 0.9434 0.0566
4 C T 0.9908 0.0092
Using the suggestion involving "with()" (I swapped Al1 and Al2 from before, but this does...