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c6tss37
2007 Aug 14
0
Limma - 2x2 factorial design matrix
...interaction. I have tried to follow the limmaGUI help example to construct the design matrix. The target file and design matrix are as follow: (C - control, M - treated)
SlideNumberFileNameCy3Cy5
M6.C6tss37-normnew.gprM6C6
C6.C9tss5-new.gprC6C9
C9.M9tss9-new.gprC9M9
M9.M6tss24-normnew.gprM9M6
C6.M6tss31-normnew.gprC6M6
M6.M9tss2-normnew.gprM6M9
M9.C9tss12-normnew.gprM9C9
C9.C6tss25-normnew.gprC9C6
SlideNumberTreatmentTimeInteraction
M6.C6-100
C6.C9010
C9.M9101
M9.M60-1-1
C6.M6100
M6.M9011
M9.C9-10-1
C9.C60-10
According to the design matrix above, may I know what is the meaning of time effect...