search for: lvml

...th earlier versions of R as well) using external BLAS and LAPACK libraries _and_ generating libR.so, libRblas.so and libRlapack.so. Without --enable-BLAS-shlib, configure is able to find and use the external LAPACK library: ./configure \ --with-blas="-L/site/intel/cmkl/8.1/lib/em64t -lmkl -lvml -lguide -lpthread" \ --with-lapack="-L/site/intel/cmkl/8.1/lib/em64t -lmkl_lapack64 -lmkl" \ --enable-R-shlib [...] External libraries: readline, BLAS(generic), LAPACK(generic) Additional capabilities: PNG, JPEG, iconv, MBCS, NLS Options enabled: shared R...

.../gfortran64_int64/lib -lacml" LAPACK=--with-lapack # MKL 11: BLAS=--with-blas="-L/site/VERSIONS/intel-11.1/mkl/lib/em64t -lmkl_gf_lp64 -lmkl_sequential -lmkl_lapack -lmkl_core" LAPACK=--with-lapack # MKL 8.1, trad. way: BLAS=--with-blas="-L/site/intel/cmkl/8.1/lib/em64t -lmkl -lvml -lguide -lpthread" LAPACK=--with-lapack I configure R like this: export CFLAGS="-O3 -mtune=opteron" export FFLAGS="-O3 -mtune=opteron" export CXXFLAGS="-O3 -mtune=opteron" export FCFLAGS="-O3 -mtune=opteron" ./configure --prefix="/site/VERSIONS/R...

...to specify the model code in C or Fortran. Thanks to the excellent vignette this works fine. However I have not yet managed to use forcing functions in C code. In pure R code this works very well with approxfun() specified outside the model: ############################################### #Model lvml <- function(t, x, parms) { with(as.list(c(parms, x)), { import <- sigimp(t) dS <- import - b*S*P + g*K #substrate dP <- c*S*P - d*K*P #producer dK <- e*P*K - f*K #consumer res <- c(dS, dP, dK) lis...

I would like to build R and packages with the Intel 10.1 compilers in RHEL4. Using the flags below, I can successfully build R using a vanilla ./configure, but when I install new packages they build with gcc. My sysadmin suggested adding the flags to ./configure as illustrated below, but then the R build blows up with the config tail output that follows far below. It looks like gcc is still being