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...(Intercept) x2 12.5 11.0 > fit$coef (Intercept) x2 12.5 100.0 > J?r?mie Lebrec Dept. of Medical Statistics and Bioinformatics Leiden University Medical Center Postzone S-05-P P.O. Box 9600 2300 RC Leiden The Netherlands j.j.p.lebrec at lumc.nl

...C-code. How can I catch the warning message: "full precision was not achieved in 'pnt'" in R. I call the function using the .C(). (options(warn=-1) didn't work) Thanks in advance -- Maarten van Iterson Center for Human and Clinical Genetics Leiden University Medical Center (LUMC) Research Building, Einthovenweg 20 Room S-04-005 Phone: 071-526 9428 E-mail: M.van_iterson.HG at lumc.nl --------------- Postal address: Postzone S-04-P Postbus 9600 2300 RC Leiden The Netherlands

...ds, Maarten ________________________________________ From: peter dalgaard [pdalgd at gmail.com] Sent: Thursday, March 10, 2016 1:26 PM To: Iterson, M. van (MOLEPI) Cc: r-devel at r-project.org Subject: Re: [Rd] rmultinom.c error probability not sum to 1 On 10 Mar 2016, at 12:47 , M.van_Iterson at lumc.nl wrote: > Dear all, > > I have a questions regarding using the c function rmultinom.c. > > I got the following error message "rbinom: probability sum should be 1, but is 0.999264" > > Which is thrown by: > > if(fabs((double)(p_tot - 1.)) > 1e-7) > MATHL...

...ckages: [1] stats graphics grDevices utils datasets methods base other attached packages: [1] lattice_0.19-13 loaded via a namespace (and not attached): [1] grid_2.12.0 tools_2.12.0 -- Maarten van Iterson Center for Human and Clinical Genetics Leiden University Medical Center (LUMC) Research Building, Einthovenweg 20 Room S-04-038 Phone: 071-526 9439 E-mail: M.van_iterson.HG at lumc.nl --------------- Postal address: Postzone S-04-P Postbus 9600 2300 RC Leiden The Netherlands

Full_Name: Jelle Goeman Version: 2.0.0 OS: windows Submission from: (NULL) (145.88.209.33) I get a strange error: > is.vector(1:10) Error: recursive default argument reference What's recursive about is.vector? Kind regards, Jelle Goeman My R: platform i386-pc-mingw32 arch i386 os mingw32 system i386, mingw32 status major 2

> On 10 Mar 2016, at 21:25 , M.van_Iterson at lumc.nl wrote: > > Hi all, > > I should have given a better explanation of my problem. Here it is. > > I extracted from my code the bit that gives the error. Place this in a file called test.c Aha. Missing info #1, C not R... > > #include <math.h> > #include <R...

Full_Name: Jelle Goeman Version: 1.9.0 OS: mingw32, windows 2000 Submission from: (NULL) (145.88.209.33) Hi Everyone, I get very strange results using the function hasArg with the ... function argument. In my own function: > gt <- globaltest(X,Y) > sampling(gt) works fine, but > sampling(globaltest(X,Y)) results in: Error in eval(expr, envir, enclos) : "missing"

Dear all, I have a questions regarding using the c function rmultinom.c. I got the following error message "rbinom: probability sum should be 1, but is 0.999264" Which is thrown by: if(fabs((double)(p_tot - 1.)) > 1e-7) MATHLIB_ERROR(_("rbinom: probability sum should be 1, but is %g"), (double) p_tot); I understand my probabilities do not sum to one close enough. I

...ned even if run with --vanilla. Interestingly, removing the Rprofile file removed one of the two "Error: syntax error:..." messages. I have been successfully compiling R through a number of versions, and this is first time I have had a real problem. Thanks for R. E.J. Neafsey eneafse@lumc.edu -.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.- r-devel mailing list -- Read http://www.ci.tuwien.ac.at/~hornik/R/R-FAQ.html Send "info", "help", or "[un]subscribe" (in the "body", not the subject !) To: r-devel-request...

On 10 Mar 2016, at 12:47 , M.van_Iterson at lumc.nl wrote: > Dear all, > > I have a questions regarding using the c function rmultinom.c. > > I got the following error message "rbinom: probability sum should be 1, but is 0.999264" > > Which is thrown by: > > if(fabs((double)(p_tot - 1.)) > 1e-7) > M...

I've got a numeric vector with values ranging from 1 to 5, I would like to catagorize these values like this: 1 becomes catagory 1 3 becomes catagory 3 And everything else in catagory 2. The simple function I wrote beneath works for single numeric data, but for some reason I am unable to feed it vectors. Any help would be appreciated, as I'm fairly new to R. -- View this message in

Hello! I have some problems using Rcmd, bacause I get errors I do not understand. I will write down what I did. Perhaps you can help me? I have a small would-be package called "globaltest", containing only the files DESCRIPTION INDEX R/globaltest.R man/globaltest.Rd I say: C:\>Rcmd check C:/Goeman/globaltest In the output it first complains that 'sh', 'make',

With the recent OS changes (windows 2000) necessitated by various worms, etc, I have now been receiving this error message when I run update and I am not sure how I can correct. >update.packages() >trying URL `http://cran.r-project.org/bin/windows/contrib/PACKAGES' Error in download.file(url = paste(contriburl, "PACKAGES", sep = "/"), : cannot open: HTTP

This is not a bug. It indicates that *you* don't have direct internet access. There is an item in the rw-FAQ about this. Please do not use R-bugs to report problems in your own environment, nor to ask questions (especially those covered in FAQs). On Tue, 16 Sep 2003 ggruene@lumc.edu wrote: > With the recent OS changes (windows 2000) necessitated by various worms, etc, I have now been receiving this error message when I run update and I am not sure how I can correct. > > >update.packages() > >trying URL `http://cran.r-project.org/bin/windows/contrib/PACKA...

In the latest windows binary (2007-04-03 r41023) pdf() with an argument paper="a4" gives an error, this was still ok in (2007-03-18 r40854) Jan Oosting > pdf("test.pdf",paper="a4") Error in pdf("test.pdf", paper = "a4") : invalid paper type 'a4' (pdf) > sessionInfo() R version 2.5.0 alpha (2007-04-03 r41023) i386-pc-mingw32

...een the outputs of 'R CMD check --as-cran' runs locally as compared to the run on the CRAN-site. Any help is appreciated. I am running R version 2.15.2 (2012-10-26) -- "Trick or Treat" Platform: x86_64-unknown-linux-gnu (64-bit) Thanks in advance, Stefan -- http://visigen.lumc.nl/emgm http://s-boehringer.org

Full_Name: Jelle Goeman Version: 2.4.0 OS: windows XP Submission from: (NULL) (145.88.209.33) Hi, I like to use optimize() to optimize functions whose evaluation is costly in terms of computation time. The Brent algorithm which is implemented in optimize was designed to optimize a function with as few function evaluations as possible. Therefore it bothers me that optimize() always evaluates

Hello everyone, I`m trying to normalize and analize an illumina SNP array. But when i`m trying to segmentate i`m getting an error: Error in sort(abs(diff(genomdat)))[1:n.keep] : only 0's may be mixed with negative subscripts. I`ve tried everything to fix this but the error still occours. Can anybody give me a tip? Thanks in advance! -- View this message in context:

I have written a program in C that two xy datasets, aligns these 2 datasets based on shared features, transforms them into equal sized histograms, transforms the histograms into cumulative distribution functions (via GSL) and finally performs a KS_test. I am wanting to validate my program's results and figure'd i would use R but i am kinda stuck at ithe histograms (I have 2 histogram

The following R code using different packages gives the same results for a simple logistic regression without regularization, but different results with regularization. This may just be a matter of different scaling of the regularization parameters, but if anyone familiar with these packages has insight into why the results differ, I'd appreciate hearing about it. I'm new to